Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1427

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1427 and DvMF_1428 are separated by 334 nucleotides DvMF_1427: DvMF_1427 - metal dependent phosphohydrolase (RefSeq), at 1,746,161 to 1,747,486 _1427 DvMF_1428: DvMF_1428 - acyl-ACP thioesterase (RefSeq), at 1,747,821 to 1,748,777 _1428 Position (kb) 1746 1747 1748Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1745.207 kb on - strandat 1745.252 kb on + strandat 1745.321 kb on - strandat 1745.680 kb on + strandat 1745.850 kb on + strandat 1745.884 kb on - strandat 1745.941 kb on - strandat 1745.993 kb on - strandat 1746.474 kb on + strand, within DvMF_1427at 1746.487 kb on + strand, within DvMF_1427at 1746.768 kb on - strand, within DvMF_1427at 1746.842 kb on + strand, within DvMF_1427at 1746.893 kb on + strand, within DvMF_1427at 1746.928 kb on + strand, within DvMF_1427at 1746.995 kb on - strand, within DvMF_1427at 1746.997 kb on + strand, within DvMF_1427at 1747.312 kb on + strand, within DvMF_1427at 1747.450 kb on - strandat 1747.595 kb on - strandat 1747.625 kb on - strandat 1747.648 kb on - strandat 1747.927 kb on + strand, within DvMF_1428at 1748.013 kb on - strand, within DvMF_1428at 1748.239 kb on - strand, within DvMF_1428at 1748.374 kb on + strand, within DvMF_1428

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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1,745,207 - -1.0
1,745,252 + -0.7
1,745,321 - -3.0
1,745,680 + -1.1
1,745,850 + +0.1
1,745,884 - -1.6
1,745,941 - +0.4
1,745,993 - -2.0
1,746,474 + DvMF_1427 0.24 +0.0
1,746,487 + DvMF_1427 0.25 -4.0
1,746,768 - DvMF_1427 0.46 -2.0
1,746,842 + DvMF_1427 0.51 -1.6
1,746,893 + DvMF_1427 0.55 +3.7
1,746,928 + DvMF_1427 0.58 -0.2
1,746,995 - DvMF_1427 0.63 -1.3
1,746,997 + DvMF_1427 0.63 +0.1
1,747,312 + DvMF_1427 0.87 -0.8
1,747,450 - -0.4
1,747,595 - -0.4
1,747,625 - -1.4
1,747,648 - -3.0
1,747,927 + DvMF_1428 0.11 -0.1
1,748,013 - DvMF_1428 0.20 -0.9
1,748,239 - DvMF_1428 0.44 +0.2
1,748,374 + DvMF_1428 0.58 -0.3

Or see this region's nucleotide sequence