Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1342

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1341 and DvMF_1342 are separated by 437 nucleotidesDvMF_1342 and DvMF_1343 overlap by 4 nucleotides DvMF_1341: DvMF_1341 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,636,049 to 1,636,786 _1341 DvMF_1342: DvMF_1342 - ABC transporter related (RefSeq), at 1,637,224 to 1,637,955 _1342 DvMF_1343: DvMF_1343 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,637,952 to 1,638,965 _1343 Position (kb) 1637 1638Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1636.726 kb on + strandat 1636.745 kb on - strandat 1636.879 kb on - strandat 1637.114 kb on + strandat 1637.273 kb on + strandat 1637.281 kb on - strandat 1637.343 kb on - strand, within DvMF_1342at 1637.350 kb on + strand, within DvMF_1342at 1637.477 kb on + strand, within DvMF_1342at 1637.793 kb on + strand, within DvMF_1342at 1637.883 kb on + strandat 1637.883 kb on + strandat 1637.984 kb on - strandat 1638.013 kb on + strandat 1638.015 kb on + strandat 1638.015 kb on + strandat 1638.015 kb on + strandat 1638.023 kb on - strandat 1638.023 kb on - strandat 1638.023 kb on - strandat 1638.023 kb on - strandat 1638.028 kb on - strandat 1638.042 kb on - strandat 1638.082 kb on + strand, within DvMF_1343at 1638.181 kb on - strand, within DvMF_1343at 1638.241 kb on + strand, within DvMF_1343at 1638.387 kb on - strand, within DvMF_1343at 1638.387 kb on - strand, within DvMF_1343at 1638.421 kb on - strand, within DvMF_1343at 1638.469 kb on + strand, within DvMF_1343at 1638.479 kb on + strand, within DvMF_1343at 1638.550 kb on + strand, within DvMF_1343at 1638.942 kb on + strandat 1638.945 kb on - strandat 1638.949 kb on + strandat 1638.949 kb on + strandat 1638.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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1,636,726 + +3.3
1,636,745 - -1.2
1,636,879 - +0.2
1,637,114 + -0.5
1,637,273 + +0.0
1,637,281 - +0.3
1,637,343 - DvMF_1342 0.16 -0.1
1,637,350 + DvMF_1342 0.17 -0.1
1,637,477 + DvMF_1342 0.35 +0.1
1,637,793 + DvMF_1342 0.78 +0.8
1,637,883 + -0.1
1,637,883 + -0.8
1,637,984 - -0.2
1,638,013 + +0.2
1,638,015 + -1.3
1,638,015 + -2.4
1,638,015 + +0.7
1,638,023 - -2.3
1,638,023 - -0.9
1,638,023 - -1.5
1,638,023 - -0.7
1,638,028 - -1.6
1,638,042 - -0.1
1,638,082 + DvMF_1343 0.13 +0.5
1,638,181 - DvMF_1343 0.23 -0.7
1,638,241 + DvMF_1343 0.29 -2.9
1,638,387 - DvMF_1343 0.43 -0.2
1,638,387 - DvMF_1343 0.43 -2.3
1,638,421 - DvMF_1343 0.46 -2.7
1,638,469 + DvMF_1343 0.51 -0.2
1,638,479 + DvMF_1343 0.52 -3.2
1,638,550 + DvMF_1343 0.59 +0.6
1,638,942 + -0.5
1,638,945 - -0.3
1,638,949 + +0.4
1,638,949 + -1.0
1,638,949 + -0.2

Or see this region's nucleotide sequence