Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1081

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1080 and DvMF_1081 are separated by 497 nucleotidesDvMF_1081 and DvMF_1082 are separated by 142 nucleotidesDvMF_1082 and DvMF_1083 are separated by 391 nucleotides DvMF_1080: DvMF_1080 - hypothetical protein (RefSeq), at 1,319,828 to 1,320,598 _1080 DvMF_1081: DvMF_1081 - hypothetical protein (RefSeq), at 1,321,096 to 1,321,299 _1081 DvMF_1082: DvMF_1082 - hypothetical protein (RefSeq), at 1,321,442 to 1,321,846 _1082 DvMF_1083: DvMF_1083 - TPR repeat-containing protein (RefSeq), at 1,322,238 to 1,322,894 _1083 Position (kb) 1321 1322Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1320.110 kb on + strand, within DvMF_1080at 1320.110 kb on + strand, within DvMF_1080at 1320.146 kb on - strand, within DvMF_1080at 1320.232 kb on - strand, within DvMF_1080at 1320.233 kb on - strand, within DvMF_1080at 1320.638 kb on - strandat 1320.701 kb on - strandat 1320.793 kb on - strandat 1320.929 kb on + strandat 1320.950 kb on - strandat 1321.045 kb on - strandat 1321.145 kb on + strand, within DvMF_1081at 1321.578 kb on - strand, within DvMF_1082at 1321.786 kb on + strand, within DvMF_1082at 1321.832 kb on - strandat 1321.897 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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1,320,110 + DvMF_1080 0.37 +0.2
1,320,110 + DvMF_1080 0.37 -4.3
1,320,146 - DvMF_1080 0.41 -0.4
1,320,232 - DvMF_1080 0.52 +3.3
1,320,233 - DvMF_1080 0.53 -0.1
1,320,638 - +0.5
1,320,701 - -0.3
1,320,793 - -0.4
1,320,929 + -0.2
1,320,950 - -0.9
1,321,045 - -1.0
1,321,145 + DvMF_1081 0.24 -1.6
1,321,578 - DvMF_1082 0.34 -0.7
1,321,786 + DvMF_1082 0.85 -0.9
1,321,832 - -1.7
1,321,897 + +0.3

Or see this region's nucleotide sequence