Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0029

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1022 and DvMF_R0029 are separated by 230 nucleotidesDvMF_R0029 and DvMF_1023 are separated by 247 nucleotides DvMF_1022: DvMF_1022 - hypothetical protein (RefSeq), at 1,238,619 to 1,239,476 _1022 DvMF_R0029: DvMF_R0029 - tRNA-Leu (RefSeq), at 1,239,707 to 1,239,793 _R0029 DvMF_1023: DvMF_1023 - transcriptional regulator, LuxR family (RefSeq), at 1,240,041 to 1,242,095 _1023 Position (kb) 1239 1240Strain fitness (log2 ratio) -1 0 1at 1238.838 kb on + strand, within DvMF_1022at 1238.909 kb on + strand, within DvMF_1022at 1238.909 kb on + strand, within DvMF_1022at 1238.917 kb on - strand, within DvMF_1022at 1239.266 kb on + strand, within DvMF_1022at 1239.295 kb on + strand, within DvMF_1022at 1239.887 kb on - strandat 1239.923 kb on + strandat 1240.447 kb on + strand, within DvMF_1023at 1240.503 kb on + strand, within DvMF_1023at 1240.516 kb on - strand, within DvMF_1023at 1240.546 kb on + strand, within DvMF_1023at 1240.785 kb on - strand, within DvMF_1023at 1240.785 kb on - strand, within DvMF_1023

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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1,238,838 + DvMF_1022 0.26 +1.5
1,238,909 + DvMF_1022 0.34 +0.8
1,238,909 + DvMF_1022 0.34 +1.3
1,238,917 - DvMF_1022 0.35 -0.7
1,239,266 + DvMF_1022 0.75 +1.6
1,239,295 + DvMF_1022 0.79 +1.7
1,239,887 - -1.4
1,239,923 + -0.8
1,240,447 + DvMF_1023 0.20 -1.2
1,240,503 + DvMF_1023 0.22 +0.2
1,240,516 - DvMF_1023 0.23 -0.9
1,240,546 + DvMF_1023 0.25 -0.9
1,240,785 - DvMF_1023 0.36 -1.3
1,240,785 - DvMF_1023 0.36 -0.6

Or see this region's nucleotide sequence