Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0038

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0036 and DvMF_0037 are separated by 2 nucleotidesDvMF_0037 and DvMF_0038 are separated by 126 nucleotidesDvMF_0038 and DvMF_0039 overlap by 4 nucleotidesDvMF_0039 and DvMF_0040 overlap by 1 nucleotides DvMF_0036: DvMF_0036 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 46,313 to 49,459 _0036 DvMF_0037: DvMF_0037 - hypothetical protein (RefSeq), at 49,462 to 50,142 _0037 DvMF_0038: DvMF_0038 - protein of unknown function DUF140 (RefSeq), at 50,269 to 51,414 _0038 DvMF_0039: DvMF_0039 - ABC transporter related (RefSeq), at 51,411 to 52,319 _0039 DvMF_0040: DvMF_0040 - Mammalian cell entry related domain protein (RefSeq), at 52,319 to 53,302 _0040 Position (kb) 50 51 52Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 49.459 kb on + strandat 49.531 kb on + strand, within DvMF_0037at 49.600 kb on + strand, within DvMF_0037at 49.644 kb on + strand, within DvMF_0037at 49.660 kb on + strand, within DvMF_0037at 49.709 kb on - strand, within DvMF_0037at 49.822 kb on - strand, within DvMF_0037at 49.836 kb on + strand, within DvMF_0037at 49.860 kb on + strand, within DvMF_0037at 49.946 kb on - strand, within DvMF_0037at 50.114 kb on + strandat 50.548 kb on + strand, within DvMF_0038at 50.574 kb on - strand, within DvMF_0038at 50.579 kb on - strand, within DvMF_0038at 50.650 kb on + strand, within DvMF_0038at 50.661 kb on + strand, within DvMF_0038at 50.669 kb on - strand, within DvMF_0038at 50.680 kb on + strand, within DvMF_0038at 50.683 kb on - strand, within DvMF_0038at 50.688 kb on - strand, within DvMF_0038at 50.758 kb on + strand, within DvMF_0038at 50.766 kb on + strand, within DvMF_0038at 50.794 kb on - strand, within DvMF_0038at 50.833 kb on + strand, within DvMF_0038at 50.836 kb on - strand, within DvMF_0038at 50.862 kb on - strand, within DvMF_0038at 50.862 kb on - strand, within DvMF_0038at 50.880 kb on + strand, within DvMF_0038at 50.995 kb on + strand, within DvMF_0038at 51.037 kb on - strand, within DvMF_0038at 51.117 kb on + strand, within DvMF_0038at 51.118 kb on - strand, within DvMF_0038at 51.367 kb on - strandat 51.431 kb on - strandat 51.593 kb on + strand, within DvMF_0039at 51.610 kb on + strand, within DvMF_0039at 51.636 kb on + strand, within DvMF_0039at 51.860 kb on + strand, within DvMF_0039at 51.860 kb on + strand, within DvMF_0039at 51.868 kb on - strand, within DvMF_0039at 52.289 kb on - strandat 52.333 kb on + strandat 52.348 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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49,459 + -0.4
49,531 + DvMF_0037 0.10 -2.2
49,600 + DvMF_0037 0.20 -0.5
49,644 + DvMF_0037 0.27 -0.5
49,660 + DvMF_0037 0.29 -1.3
49,709 - DvMF_0037 0.36 -2.1
49,822 - DvMF_0037 0.53 -1.7
49,836 + DvMF_0037 0.55 -2.2
49,860 + DvMF_0037 0.58 -0.5
49,946 - DvMF_0037 0.71 -1.1
50,114 + -0.0
50,548 + DvMF_0038 0.24 -0.2
50,574 - DvMF_0038 0.27 -0.4
50,579 - DvMF_0038 0.27 -1.6
50,650 + DvMF_0038 0.33 -1.6
50,661 + DvMF_0038 0.34 +0.0
50,669 - DvMF_0038 0.35 -0.3
50,680 + DvMF_0038 0.36 -0.3
50,683 - DvMF_0038 0.36 -1.2
50,688 - DvMF_0038 0.37 -1.3
50,758 + DvMF_0038 0.43 -1.0
50,766 + DvMF_0038 0.43 -0.3
50,794 - DvMF_0038 0.46 -1.1
50,833 + DvMF_0038 0.49 -1.7
50,836 - DvMF_0038 0.49 -0.3
50,862 - DvMF_0038 0.52 -2.7
50,862 - DvMF_0038 0.52 +1.1
50,880 + DvMF_0038 0.53 -0.9
50,995 + DvMF_0038 0.63 +1.3
51,037 - DvMF_0038 0.67 -0.7
51,117 + DvMF_0038 0.74 -2.0
51,118 - DvMF_0038 0.74 -1.8
51,367 - -0.4
51,431 - -2.4
51,593 + DvMF_0039 0.20 -0.8
51,610 + DvMF_0039 0.22 -1.5
51,636 + DvMF_0039 0.25 -1.8
51,860 + DvMF_0039 0.49 -1.3
51,860 + DvMF_0039 0.49 +0.7
51,868 - DvMF_0039 0.50 -0.7
52,289 - -4.4
52,333 + -1.6
52,348 - +3.6

Or see this region's nucleotide sequence