Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0001

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0006 and DvMF_R0001 are separated by 405 nucleotidesDvMF_R0001 and DvMF_0007 are separated by 316 nucleotidesDvMF_0007 and DvMF_R0002 are separated by 71 nucleotidesDvMF_R0002 and DvMF_R0003 are separated by 57 nucleotides DvMF_0006: DvMF_0006 - hypothetical protein (RefSeq), at 7,599 to 8,240 _0006 DvMF_R0001: DvMF_R0001 - tRNA-Gly (RefSeq), at 8,646 to 8,720 _R0001 DvMF_0007: DvMF_0007 - protein of unknown function DUF302 (RefSeq), at 9,037 to 9,444 _0007 DvMF_R0002: DvMF_R0002 - tRNA-Gly (RefSeq), at 9,516 to 9,590 _R0002 DvMF_R0003: DvMF_R0003 - tRNA-Gly (RefSeq), at 9,648 to 9,722 _R0003 Position (kb) 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 7.689 kb on + strand, within DvMF_0006at 7.803 kb on + strand, within DvMF_0006at 7.953 kb on - strand, within DvMF_0006at 7.972 kb on - strand, within DvMF_0006at 8.083 kb on - strand, within DvMF_0006at 8.096 kb on + strand, within DvMF_0006at 8.254 kb on - strandat 8.339 kb on - strandat 8.505 kb on + strandat 8.633 kb on - strandat 8.683 kb on - strand, within DvMF_R0001at 8.966 kb on - strandat 8.993 kb on - strandat 9.136 kb on - strand, within DvMF_0007at 9.189 kb on + strand, within DvMF_0007at 9.241 kb on + strand, within DvMF_0007at 9.268 kb on + strand, within DvMF_0007at 9.268 kb on + strand, within DvMF_0007at 9.362 kb on + strand, within DvMF_0007at 9.399 kb on - strand, within DvMF_0007at 9.412 kb on + strandat 9.553 kb on - strand, within DvMF_R0002at 9.702 kb on + strand, within DvMF_R0003

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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7,689 + DvMF_0006 0.14 +0.2
7,803 + DvMF_0006 0.32 -0.7
7,953 - DvMF_0006 0.55 -2.1
7,972 - DvMF_0006 0.58 +0.3
8,083 - DvMF_0006 0.75 -1.0
8,096 + DvMF_0006 0.77 +0.4
8,254 - -1.0
8,339 - -1.7
8,505 + +0.6
8,633 - -0.3
8,683 - DvMF_R0001 0.49 -4.1
8,966 - -1.0
8,993 - -1.2
9,136 - DvMF_0007 0.24 -0.2
9,189 + DvMF_0007 0.37 -1.4
9,241 + DvMF_0007 0.50 +0.2
9,268 + DvMF_0007 0.57 -1.5
9,268 + DvMF_0007 0.57 +0.1
9,362 + DvMF_0007 0.80 +0.3
9,399 - DvMF_0007 0.89 -0.0
9,412 + -3.4
9,553 - DvMF_R0002 0.49 -0.2
9,702 + DvMF_R0003 0.72 -1.5

Or see this region's nucleotide sequence