Experiment: Varel_Bryant medium with Dibucaine 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4107 and BT4108 are separated by 302 nucleotides BT4108 and BT4109 are separated by 9 nucleotides
BT4107: BT4107 - putative phosphotransferase enzyme II, C component (NCBI ptt file), at 5,370,014 to 5,371,411
BT4107
BT4108: BT4108 - conserved hypothetical protein (NCBI ptt file), at 5,371,714 to 5,372,913
BT4108
BT4109: BT4109 - putative pectinesterase precursor (NCBI ptt file), at 5,372,923 to 5,373,891
BT4109
Position (kb) 5371
5372
5373 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5370.884 kb on - strand, within BT4107 at 5370.895 kb on + strand, within BT4107 at 5370.896 kb on - strand, within BT4107 at 5370.947 kb on + strand, within BT4107 at 5370.948 kb on - strand, within BT4107 at 5370.949 kb on + strand, within BT4107 at 5370.955 kb on - strand, within BT4107 at 5370.988 kb on + strand, within BT4107 at 5370.992 kb on - strand, within BT4107 at 5371.005 kb on + strand, within BT4107 at 5371.005 kb on + strand, within BT4107 at 5371.055 kb on - strand, within BT4107 at 5371.063 kb on + strand, within BT4107 at 5371.097 kb on + strand, within BT4107 at 5371.143 kb on + strand, within BT4107 at 5371.209 kb on - strand, within BT4107 at 5371.221 kb on - strand, within BT4107 at 5371.221 kb on - strand, within BT4107 at 5371.237 kb on + strand, within BT4107 at 5371.237 kb on + strand, within BT4107 at 5371.259 kb on + strand, within BT4107 at 5371.330 kb on + strand at 5371.334 kb on + strand at 5371.341 kb on - strand at 5371.401 kb on - strand at 5371.659 kb on - strand at 5371.692 kb on - strand at 5371.751 kb on + strand at 5371.932 kb on - strand, within BT4108 at 5371.934 kb on - strand, within BT4108 at 5371.938 kb on + strand, within BT4108 at 5371.979 kb on - strand, within BT4108 at 5372.010 kb on + strand, within BT4108 at 5372.011 kb on - strand, within BT4108 at 5372.013 kb on + strand, within BT4108 at 5372.081 kb on - strand, within BT4108 at 5372.188 kb on + strand, within BT4108 at 5372.219 kb on - strand, within BT4108 at 5372.221 kb on - strand, within BT4108 at 5372.236 kb on + strand, within BT4108 at 5372.275 kb on + strand, within BT4108 at 5372.302 kb on - strand, within BT4108 at 5372.320 kb on + strand, within BT4108 at 5372.321 kb on - strand, within BT4108 at 5372.451 kb on - strand, within BT4108 at 5372.519 kb on + strand, within BT4108 at 5372.636 kb on - strand, within BT4108 at 5372.658 kb on + strand, within BT4108 at 5372.668 kb on - strand, within BT4108 at 5372.758 kb on - strand, within BT4108 at 5372.760 kb on - strand, within BT4108 at 5372.824 kb on + strand at 5372.935 kb on - strand at 5373.127 kb on + strand, within BT4109 at 5373.127 kb on + strand, within BT4109 at 5373.176 kb on + strand, within BT4109 at 5373.209 kb on - strand, within BT4109 at 5373.283 kb on - strand, within BT4109 at 5373.346 kb on - strand, within BT4109 at 5373.402 kb on + strand, within BT4109 at 5373.403 kb on - strand, within BT4109 at 5373.403 kb on - strand, within BT4109 at 5373.487 kb on - strand, within BT4109 at 5373.517 kb on - strand, within BT4109 at 5373.535 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.575 kb on - strand, within BT4109 at 5373.870 kb on + strand at 5373.885 kb on + strand at 5373.890 kb on - strand at 5373.890 kb on - strand at 5373.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant medium with Dibucaine 0.2 mM remove 5,370,884 - BT4107 0.62 -1.3 5,370,895 + BT4107 0.63 +2.0 5,370,896 - BT4107 0.63 +1.0 5,370,947 + BT4107 0.67 -1.4 5,370,948 - BT4107 0.67 -0.0 5,370,949 + BT4107 0.67 -1.2 5,370,955 - BT4107 0.67 -1.0 5,370,988 + BT4107 0.70 +0.4 5,370,992 - BT4107 0.70 -0.9 5,371,005 + BT4107 0.71 +0.1 5,371,005 + BT4107 0.71 -0.9 5,371,055 - BT4107 0.74 -0.2 5,371,063 + BT4107 0.75 +1.0 5,371,097 + BT4107 0.77 -0.0 5,371,143 + BT4107 0.81 -1.0 5,371,209 - BT4107 0.85 +1.0 5,371,221 - BT4107 0.86 -1.7 5,371,221 - BT4107 0.86 -1.6 5,371,237 + BT4107 0.87 -1.2 5,371,237 + BT4107 0.87 -0.1 5,371,259 + BT4107 0.89 -0.6 5,371,330 + -1.0 5,371,334 + -1.4 5,371,341 - -1.2 5,371,401 - -0.3 5,371,659 - -0.7 5,371,692 - -0.2 5,371,751 + -1.3 5,371,932 - BT4108 0.18 -0.0 5,371,934 - BT4108 0.18 -0.8 5,371,938 + BT4108 0.19 -0.3 5,371,979 - BT4108 0.22 -0.0 5,372,010 + BT4108 0.25 +0.2 5,372,011 - BT4108 0.25 -0.2 5,372,013 + BT4108 0.25 -1.5 5,372,081 - BT4108 0.31 +1.0 5,372,188 + BT4108 0.40 +1.0 5,372,219 - BT4108 0.42 +0.3 5,372,221 - BT4108 0.42 -1.8 5,372,236 + BT4108 0.43 -1.6 5,372,275 + BT4108 0.47 +1.6 5,372,302 - BT4108 0.49 -1.3 5,372,320 + BT4108 0.51 -0.6 5,372,321 - BT4108 0.51 -0.4 5,372,451 - BT4108 0.61 +0.4 5,372,519 + BT4108 0.67 -0.0 5,372,636 - BT4108 0.77 +1.0 5,372,658 + BT4108 0.79 +1.0 5,372,668 - BT4108 0.80 -1.7 5,372,758 - BT4108 0.87 -0.9 5,372,760 - BT4108 0.87 -0.4 5,372,824 + -0.9 5,372,935 - +3.0 5,373,127 + BT4109 0.21 -2.2 5,373,127 + BT4109 0.21 -0.0 5,373,176 + BT4109 0.26 -1.3 5,373,209 - BT4109 0.30 -0.0 5,373,283 - BT4109 0.37 -0.0 5,373,346 - BT4109 0.44 +0.4 5,373,402 + BT4109 0.49 +1.6 5,373,403 - BT4109 0.50 -0.5 5,373,403 - BT4109 0.50 -0.0 5,373,487 - BT4109 0.58 +2.0 5,373,517 - BT4109 0.61 -0.6 5,373,535 - BT4109 0.63 +0.8 5,373,575 - BT4109 0.67 -0.6 5,373,575 - BT4109 0.67 -0.5 5,373,575 - BT4109 0.67 -0.0 5,373,575 - BT4109 0.67 -1.6 5,373,870 + -0.6 5,373,885 + -0.2 5,373,890 - +1.0 5,373,890 - +0.6 5,373,890 - -1.2
Or see this region's nucleotide sequence