Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.996.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.993.1 and Xcc-8004.994.1 are separated by 62 nucleotidesXcc-8004.994.1 and Xcc-8004.995.1 are separated by 78 nucleotidesXcc-8004.995.1 and Xcc-8004.996.1 are separated by 0 nucleotidesXcc-8004.996.1 and Xcc-8004.997.1 are separated by 185 nucleotidesXcc-8004.997.1 and Xcc-8004.998.1 are separated by 1 nucleotides Xcc-8004.993.1: Xcc-8004.993.1 - cellulase S, at 941,628 to 942,416 Xcc-8004.993.1 Xcc-8004.994.1: Xcc-8004.994.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 942,479 to 942,898 Xcc-8004.994.1 Xcc-8004.995.1: Xcc-8004.995.1 - rhamnogalacturonase B, at 942,977 to 943,399 Xcc-8004.995.1 Xcc-8004.996.1: Xcc-8004.996.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 943,400 to 944,101 Xcc-8004.996.1 Xcc-8004.997.1: Xcc-8004.997.1 - Possible GRAM domain, at 944,287 to 944,658 Xcc-8004.997.1 Xcc-8004.998.1: Xcc-8004.998.1 - putative; ORF located using Glimmer/Genemark, at 944,660 to 945,202 Xcc-8004.998.1 Position (kb) 943 944 945Strain fitness (log2 ratio) -3 -2 -1 0 1at 942.420 kb on + strandat 942.420 kb on + strandat 942.421 kb on - strandat 942.507 kb on + strandat 942.797 kb on - strand, within Xcc-8004.994.1at 942.876 kb on + strandat 942.877 kb on - strandat 942.877 kb on - strandat 942.877 kb on - strandat 942.939 kb on + strandat 943.083 kb on + strand, within Xcc-8004.995.1at 943.083 kb on + strand, within Xcc-8004.995.1at 943.084 kb on - strand, within Xcc-8004.995.1at 943.129 kb on - strand, within Xcc-8004.995.1at 943.158 kb on + strand, within Xcc-8004.995.1at 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.402 kb on - strandat 943.402 kb on - strandat 943.408 kb on - strandat 943.561 kb on - strand, within Xcc-8004.996.1at 943.734 kb on + strand, within Xcc-8004.996.1at 943.735 kb on - strand, within Xcc-8004.996.1at 943.735 kb on - strand, within Xcc-8004.996.1at 943.735 kb on - strand, within Xcc-8004.996.1at 943.735 kb on - strand, within Xcc-8004.996.1at 943.764 kb on + strand, within Xcc-8004.996.1at 943.764 kb on + strand, within Xcc-8004.996.1at 943.765 kb on - strand, within Xcc-8004.996.1at 943.765 kb on - strand, within Xcc-8004.996.1at 943.765 kb on - strand, within Xcc-8004.996.1at 943.765 kb on - strand, within Xcc-8004.996.1at 943.767 kb on + strand, within Xcc-8004.996.1at 943.768 kb on - strand, within Xcc-8004.996.1at 944.034 kb on + strandat 944.035 kb on - strandat 944.127 kb on + strandat 944.375 kb on - strand, within Xcc-8004.997.1at 944.375 kb on - strand, within Xcc-8004.997.1at 944.375 kb on - strand, within Xcc-8004.997.1at 944.375 kb on - strand, within Xcc-8004.997.1at 945.069 kb on + strand, within Xcc-8004.998.1at 945.070 kb on - strand, within Xcc-8004.998.1at 945.097 kb on - strand, within Xcc-8004.998.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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942,420 + +0.2
942,420 + -0.3
942,421 - +0.7
942,507 + +0.2
942,797 - Xcc-8004.994.1 0.76 +0.0
942,876 + -0.3
942,877 - +0.7
942,877 - -0.5
942,877 - -0.4
942,939 + +1.6
943,083 + Xcc-8004.995.1 0.25 -0.5
943,083 + Xcc-8004.995.1 0.25 -1.0
943,084 - Xcc-8004.995.1 0.25 -0.2
943,129 - Xcc-8004.995.1 0.36 -2.3
943,158 + Xcc-8004.995.1 0.43 -0.4
943,401 + -0.0
943,401 + -0.8
943,401 + -1.0
943,401 + +0.2
943,401 + -1.6
943,401 + +0.4
943,402 - +0.0
943,402 - -1.9
943,408 - +1.5
943,561 - Xcc-8004.996.1 0.23 +0.2
943,734 + Xcc-8004.996.1 0.48 -0.3
943,735 - Xcc-8004.996.1 0.48 +0.2
943,735 - Xcc-8004.996.1 0.48 -0.5
943,735 - Xcc-8004.996.1 0.48 -1.2
943,735 - Xcc-8004.996.1 0.48 -0.4
943,764 + Xcc-8004.996.1 0.52 +0.2
943,764 + Xcc-8004.996.1 0.52 +0.4
943,765 - Xcc-8004.996.1 0.52 -0.3
943,765 - Xcc-8004.996.1 0.52 +0.5
943,765 - Xcc-8004.996.1 0.52 +0.7
943,765 - Xcc-8004.996.1 0.52 -0.0
943,767 + Xcc-8004.996.1 0.52 -1.0
943,768 - Xcc-8004.996.1 0.52 -0.7
944,034 + +0.1
944,035 - -0.5
944,127 + -0.2
944,375 - Xcc-8004.997.1 0.24 +0.1
944,375 - Xcc-8004.997.1 0.24 +0.7
944,375 - Xcc-8004.997.1 0.24 +0.4
944,375 - Xcc-8004.997.1 0.24 -3.3
945,069 + Xcc-8004.998.1 0.75 +0.5
945,070 - Xcc-8004.998.1 0.76 +0.5
945,097 - Xcc-8004.998.1 0.80 -0.8

Or see this region's nucleotide sequence