Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.992.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.991.1 and Xcc-8004.992.1 are separated by 469 nucleotidesXcc-8004.992.1 and Xcc-8004.993.1 are separated by 285 nucleotides Xcc-8004.991.1: Xcc-8004.991.1 - hypothetical protein, at 939,113 to 940,057 Xcc-8004.991.1 Xcc-8004.992.1: Xcc-8004.992.1 - Cellulase S, at 940,527 to 941,342 Xcc-8004.992.1 Xcc-8004.993.1: Xcc-8004.993.1 - cellulase S, at 941,628 to 942,416 Xcc-8004.993.1 Position (kb) 940 941 942Strain fitness (log2 ratio) -2 -1 0 1 2at 939.537 kb on + strand, within Xcc-8004.991.1at 939.537 kb on + strand, within Xcc-8004.991.1at 939.538 kb on - strand, within Xcc-8004.991.1at 939.543 kb on + strand, within Xcc-8004.991.1at 939.543 kb on + strand, within Xcc-8004.991.1at 939.543 kb on + strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.615 kb on - strand, within Xcc-8004.991.1at 939.721 kb on - strand, within Xcc-8004.991.1at 939.721 kb on - strand, within Xcc-8004.991.1at 939.721 kb on - strand, within Xcc-8004.991.1at 939.765 kb on - strand, within Xcc-8004.991.1at 939.787 kb on + strand, within Xcc-8004.991.1at 939.787 kb on + strand, within Xcc-8004.991.1at 939.787 kb on + strand, within Xcc-8004.991.1at 939.788 kb on - strand, within Xcc-8004.991.1at 939.810 kb on + strand, within Xcc-8004.991.1at 939.811 kb on - strand, within Xcc-8004.991.1at 939.837 kb on - strand, within Xcc-8004.991.1at 940.215 kb on + strandat 940.215 kb on + strandat 940.216 kb on - strandat 940.383 kb on - strandat 940.419 kb on + strandat 940.419 kb on + strandat 940.420 kb on - strandat 940.420 kb on - strandat 940.420 kb on - strandat 940.443 kb on + strandat 940.443 kb on + strandat 940.443 kb on + strandat 940.443 kb on + strandat 940.666 kb on - strand, within Xcc-8004.992.1at 940.666 kb on - strand, within Xcc-8004.992.1at 940.788 kb on + strand, within Xcc-8004.992.1at 940.831 kb on - strand, within Xcc-8004.992.1at 940.909 kb on - strand, within Xcc-8004.992.1at 940.909 kb on - strand, within Xcc-8004.992.1at 941.115 kb on + strand, within Xcc-8004.992.1at 941.118 kb on + strand, within Xcc-8004.992.1at 941.118 kb on + strand, within Xcc-8004.992.1at 941.118 kb on + strand, within Xcc-8004.992.1at 941.118 kb on + strand, within Xcc-8004.992.1at 941.119 kb on - strand, within Xcc-8004.992.1at 941.119 kb on - strand, within Xcc-8004.992.1at 941.119 kb on - strand, within Xcc-8004.992.1at 941.259 kb on + strand, within Xcc-8004.992.1at 941.259 kb on + strand, within Xcc-8004.992.1at 941.259 kb on + strand, within Xcc-8004.992.1at 941.260 kb on - strand, within Xcc-8004.992.1at 941.260 kb on - strand, within Xcc-8004.992.1at 941.437 kb on + strandat 941.438 kb on - strandat 941.596 kb on - strandat 941.596 kb on - strandat 941.725 kb on - strand, within Xcc-8004.993.1at 941.743 kb on + strand, within Xcc-8004.993.1at 941.743 kb on + strand, within Xcc-8004.993.1at 941.743 kb on + strand, within Xcc-8004.993.1at 941.744 kb on - strand, within Xcc-8004.993.1at 941.758 kb on - strand, within Xcc-8004.993.1at 941.758 kb on - strand, within Xcc-8004.993.1at 941.763 kb on + strand, within Xcc-8004.993.1at 941.790 kb on - strand, within Xcc-8004.993.1at 941.844 kb on + strand, within Xcc-8004.993.1at 941.844 kb on + strand, within Xcc-8004.993.1at 941.845 kb on - strand, within Xcc-8004.993.1at 941.845 kb on - strand, within Xcc-8004.993.1at 941.901 kb on + strand, within Xcc-8004.993.1at 942.108 kb on - strand, within Xcc-8004.993.1at 942.108 kb on - strand, within Xcc-8004.993.1at 942.150 kb on + strand, within Xcc-8004.993.1at 942.150 kb on + strand, within Xcc-8004.993.1at 942.189 kb on + strand, within Xcc-8004.993.1at 942.190 kb on - strand, within Xcc-8004.993.1at 942.230 kb on + strand, within Xcc-8004.993.1at 942.333 kb on + strand, within Xcc-8004.993.1at 942.333 kb on + strand, within Xcc-8004.993.1at 942.334 kb on - strand, within Xcc-8004.993.1at 942.334 kb on - strand, within Xcc-8004.993.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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939,537 + Xcc-8004.991.1 0.45 +0.3
939,537 + Xcc-8004.991.1 0.45 +0.7
939,538 - Xcc-8004.991.1 0.45 -1.3
939,543 + Xcc-8004.991.1 0.46 +0.6
939,543 + Xcc-8004.991.1 0.46 -0.6
939,543 + Xcc-8004.991.1 0.46 +0.1
939,544 - Xcc-8004.991.1 0.46 -1.7
939,544 - Xcc-8004.991.1 0.46 -2.0
939,544 - Xcc-8004.991.1 0.46 +0.4
939,544 - Xcc-8004.991.1 0.46 +0.5
939,544 - Xcc-8004.991.1 0.46 -0.6
939,544 - Xcc-8004.991.1 0.46 +0.5
939,544 - Xcc-8004.991.1 0.46 -0.4
939,544 - Xcc-8004.991.1 0.46 +0.1
939,615 - Xcc-8004.991.1 0.53 -0.6
939,721 - Xcc-8004.991.1 0.64 +0.2
939,721 - Xcc-8004.991.1 0.64 -0.6
939,721 - Xcc-8004.991.1 0.64 -0.9
939,765 - Xcc-8004.991.1 0.69 +0.0
939,787 + Xcc-8004.991.1 0.71 -0.1
939,787 + Xcc-8004.991.1 0.71 +0.2
939,787 + Xcc-8004.991.1 0.71 +0.1
939,788 - Xcc-8004.991.1 0.71 -0.0
939,810 + Xcc-8004.991.1 0.74 -0.7
939,811 - Xcc-8004.991.1 0.74 +0.2
939,837 - Xcc-8004.991.1 0.77 -0.6
940,215 + -1.8
940,215 + -0.3
940,216 - +0.2
940,383 - -0.5
940,419 + -0.5
940,419 + +1.2
940,420 - -0.3
940,420 - -0.1
940,420 - -0.5
940,443 + -0.6
940,443 + -1.1
940,443 + +1.7
940,443 + +0.1
940,666 - Xcc-8004.992.1 0.17 +0.6
940,666 - Xcc-8004.992.1 0.17 +0.5
940,788 + Xcc-8004.992.1 0.32 +0.1
940,831 - Xcc-8004.992.1 0.37 +1.1
940,909 - Xcc-8004.992.1 0.47 +0.8
940,909 - Xcc-8004.992.1 0.47 +0.2
941,115 + Xcc-8004.992.1 0.72 -0.3
941,118 + Xcc-8004.992.1 0.72 +0.3
941,118 + Xcc-8004.992.1 0.72 +2.1
941,118 + Xcc-8004.992.1 0.72 +0.3
941,118 + Xcc-8004.992.1 0.72 -1.5
941,119 - Xcc-8004.992.1 0.73 -0.4
941,119 - Xcc-8004.992.1 0.73 +0.4
941,119 - Xcc-8004.992.1 0.73 -1.4
941,259 + Xcc-8004.992.1 0.90 -0.4
941,259 + Xcc-8004.992.1 0.90 -1.1
941,259 + Xcc-8004.992.1 0.90 +0.9
941,260 - Xcc-8004.992.1 0.90 -1.2
941,260 - Xcc-8004.992.1 0.90 +1.1
941,437 + -0.4
941,438 - -0.1
941,596 - -0.4
941,596 - +0.1
941,725 - Xcc-8004.993.1 0.12 +0.8
941,743 + Xcc-8004.993.1 0.15 +0.4
941,743 + Xcc-8004.993.1 0.15 +1.2
941,743 + Xcc-8004.993.1 0.15 +0.5
941,744 - Xcc-8004.993.1 0.15 +0.5
941,758 - Xcc-8004.993.1 0.16 -0.1
941,758 - Xcc-8004.993.1 0.16 -0.5
941,763 + Xcc-8004.993.1 0.17 -0.6
941,790 - Xcc-8004.993.1 0.21 +0.6
941,844 + Xcc-8004.993.1 0.27 -0.9
941,844 + Xcc-8004.993.1 0.27 -0.4
941,845 - Xcc-8004.993.1 0.28 +0.2
941,845 - Xcc-8004.993.1 0.28 +0.2
941,901 + Xcc-8004.993.1 0.35 -0.5
942,108 - Xcc-8004.993.1 0.61 +0.2
942,108 - Xcc-8004.993.1 0.61 -0.5
942,150 + Xcc-8004.993.1 0.66 +0.4
942,150 + Xcc-8004.993.1 0.66 -0.0
942,189 + Xcc-8004.993.1 0.71 +1.0
942,190 - Xcc-8004.993.1 0.71 +0.2
942,230 + Xcc-8004.993.1 0.76 -0.7
942,333 + Xcc-8004.993.1 0.89 -0.9
942,333 + Xcc-8004.993.1 0.89 -0.7
942,334 - Xcc-8004.993.1 0.89 -0.6
942,334 - Xcc-8004.993.1 0.89 +1.2

Or see this region's nucleotide sequence