Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.972.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.970.1 and Xcc-8004.971.1 are separated by 203 nucleotidesXcc-8004.971.1 and Xcc-8004.972.1 are separated by 222 nucleotidesXcc-8004.972.1 and Xcc-8004.973.1 are separated by 39 nucleotides Xcc-8004.970.1: Xcc-8004.970.1 - Probable cytochrome c2, at 921,859 to 922,656 Xcc-8004.970.1 Xcc-8004.971.1: Xcc-8004.971.1 - GTP-binding protein EngB, at 922,860 to 923,426 Xcc-8004.971.1 Xcc-8004.972.1: Xcc-8004.972.1 - Glutamate--cysteine ligase (EC 6.3.2.2), at 923,649 to 925,286 Xcc-8004.972.1 Xcc-8004.973.1: Xcc-8004.973.1 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 925,326 to 926,822 Xcc-8004.973.1 Position (kb) 923 924 925 926Strain fitness (log2 ratio) -2 -1 0 1at 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.672 kb on - strandat 923.424 kb on + strandat 923.425 kb on - strandat 923.594 kb on + strandat 923.594 kb on + strandat 923.595 kb on - strandat 923.849 kb on + strand, within Xcc-8004.972.1at 923.849 kb on + strand, within Xcc-8004.972.1at 923.850 kb on - strand, within Xcc-8004.972.1at 923.851 kb on + strand, within Xcc-8004.972.1at 923.851 kb on + strand, within Xcc-8004.972.1at 923.851 kb on + strand, within Xcc-8004.972.1at 923.851 kb on + strand, within Xcc-8004.972.1at 923.851 kb on + strand, within Xcc-8004.972.1at 923.851 kb on + strand, within Xcc-8004.972.1at 923.852 kb on - strand, within Xcc-8004.972.1at 923.852 kb on - strand, within Xcc-8004.972.1at 923.852 kb on - strand, within Xcc-8004.972.1at 923.852 kb on - strand, within Xcc-8004.972.1at 923.852 kb on - strand, within Xcc-8004.972.1at 923.852 kb on - strand, within Xcc-8004.972.1at 923.852 kb on - strand, within Xcc-8004.972.1at 925.281 kb on + strandat 925.610 kb on - strand, within Xcc-8004.973.1at 925.610 kb on - strand, within Xcc-8004.973.1at 925.724 kb on + strand, within Xcc-8004.973.1at 925.724 kb on + strand, within Xcc-8004.973.1at 925.724 kb on + strand, within Xcc-8004.973.1at 925.725 kb on - strand, within Xcc-8004.973.1at 925.725 kb on - strand, within Xcc-8004.973.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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922,662 - +0.2
922,662 - -1.2
922,662 - +0.3
922,662 - -0.1
922,662 - -1.5
922,662 - +0.1
922,662 - +0.3
922,672 - -0.8
923,424 + +0.4
923,425 - -0.2
923,594 + -0.6
923,594 + +0.7
923,595 - -0.3
923,849 + Xcc-8004.972.1 0.12 -0.9
923,849 + Xcc-8004.972.1 0.12 -0.8
923,850 - Xcc-8004.972.1 0.12 -0.8
923,851 + Xcc-8004.972.1 0.12 +1.2
923,851 + Xcc-8004.972.1 0.12 -0.5
923,851 + Xcc-8004.972.1 0.12 -0.0
923,851 + Xcc-8004.972.1 0.12 -1.6
923,851 + Xcc-8004.972.1 0.12 +0.4
923,851 + Xcc-8004.972.1 0.12 -0.5
923,852 - Xcc-8004.972.1 0.12 -0.3
923,852 - Xcc-8004.972.1 0.12 +0.7
923,852 - Xcc-8004.972.1 0.12 +0.6
923,852 - Xcc-8004.972.1 0.12 +0.7
923,852 - Xcc-8004.972.1 0.12 -2.0
923,852 - Xcc-8004.972.1 0.12 +0.3
923,852 - Xcc-8004.972.1 0.12 -0.3
925,281 + +0.6
925,610 - Xcc-8004.973.1 0.19 -0.3
925,610 - Xcc-8004.973.1 0.19 +0.3
925,724 + Xcc-8004.973.1 0.27 +0.1
925,724 + Xcc-8004.973.1 0.27 +0.9
925,724 + Xcc-8004.973.1 0.27 -0.9
925,725 - Xcc-8004.973.1 0.27 +0.2
925,725 - Xcc-8004.973.1 0.27 +0.7

Or see this region's nucleotide sequence