Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.939.1 and Xcc-8004.940.1 are separated by 10 nucleotides Xcc-8004.940.1 and Xcc-8004.941.1 overlap by 38 nucleotides Xcc-8004.941.1 and Xcc-8004.942.1 overlap by 4 nucleotides Xcc-8004.942.1 and Xcc-8004.943.1 are separated by 4 nucleotides
Xcc-8004.939.1: Xcc-8004.939.1 - hypothetical protein, at 882,423 to 885,077
Xcc-8004.939.1
Xcc-8004.940.1: Xcc-8004.940.1 - hypothetical protein, at 885,088 to 885,273
Xcc-8004.940.1
Xcc-8004.941.1: Xcc-8004.941.1 - General secretion pathway protein C, at 885,236 to 886,048
Xcc-8004.941.1
Xcc-8004.942.1: Xcc-8004.942.1 - hypothetical protein, at 886,045 to 888,117
Xcc-8004.942.1
Xcc-8004.943.1: Xcc-8004.943.1 - General secretion pathway protein E, at 888,122 to 889,621
Xcc-8004.943.1
Position (kb) 886
887
888
889 Strain fitness (log2 ratio) -1
0
1
2
3 at 885.045 kb on - strand at 885.048 kb on + strand at 885.048 kb on + strand at 885.049 kb on - strand at 885.055 kb on + strand at 885.524 kb on + strand, within Xcc-8004.941.1 at 885.998 kb on + strand at 887.228 kb on - strand, within Xcc-8004.942.1 at 887.520 kb on + strand, within Xcc-8004.942.1 at 887.521 kb on - strand, within Xcc-8004.942.1 at 887.604 kb on - strand, within Xcc-8004.942.1 at 887.604 kb on - strand, within Xcc-8004.942.1 at 887.604 kb on - strand, within Xcc-8004.942.1 at 887.950 kb on + strand at 887.951 kb on - strand at 887.956 kb on + strand at 887.956 kb on + strand at 887.957 kb on - strand at 888.338 kb on + strand, within Xcc-8004.943.1 at 888.339 kb on - strand, within Xcc-8004.943.1 at 888.339 kb on - strand, within Xcc-8004.943.1 at 888.339 kb on - strand, within Xcc-8004.943.1 at 888.533 kb on + strand, within Xcc-8004.943.1 at 888.917 kb on + strand, within Xcc-8004.943.1 at 888.983 kb on + strand, within Xcc-8004.943.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 885,045 - +0.5 885,048 + +0.1 885,048 + -0.0 885,049 - -0.0 885,055 + +0.1 885,524 + Xcc-8004.941.1 0.35 +1.1 885,998 + +0.2 887,228 - Xcc-8004.942.1 0.57 -0.7 887,520 + Xcc-8004.942.1 0.71 -0.7 887,521 - Xcc-8004.942.1 0.71 -0.9 887,604 - Xcc-8004.942.1 0.75 +0.6 887,604 - Xcc-8004.942.1 0.75 -0.2 887,604 - Xcc-8004.942.1 0.75 -1.1 887,950 + -1.1 887,951 - +2.1 887,956 + -0.2 887,956 + +0.7 887,957 - +3.0 888,338 + Xcc-8004.943.1 0.14 +0.0 888,339 - Xcc-8004.943.1 0.14 -0.6 888,339 - Xcc-8004.943.1 0.14 +0.7 888,339 - Xcc-8004.943.1 0.14 -0.3 888,533 + Xcc-8004.943.1 0.27 -0.2 888,917 + Xcc-8004.943.1 0.53 +1.0 888,983 + Xcc-8004.943.1 0.57 +0.4
Or see this region's nucleotide sequence