Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.889.1 and Xcc-8004.890.1 are separated by 48 nucleotides Xcc-8004.890.1 and Xcc-8004.891.1 overlap by 7 nucleotides Xcc-8004.891.1 and Xcc-8004.892.1 overlap by 169 nucleotides
Xcc-8004.889.1: Xcc-8004.889.1 - Type IV secretion system protein VirD4, at 836,807 to 837,520
Xcc-8004.889.1
Xcc-8004.890.1: Xcc-8004.890.1 - Mobile element protein, at 837,569 to 837,832
Xcc-8004.890.1
Xcc-8004.891.1: Xcc-8004.891.1 - Mobile element protein, at 837,826 to 838,671
Xcc-8004.891.1
Xcc-8004.892.1: Xcc-8004.892.1 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 838,503 to 839,714
Xcc-8004.892.1
Position (kb) 837
838
839 Strain fitness (log2 ratio) -1
0
1
2 at 836.946 kb on - strand, within Xcc-8004.889.1 at 837.013 kb on - strand, within Xcc-8004.889.1 at 837.013 kb on - strand, within Xcc-8004.889.1 at 837.013 kb on - strand, within Xcc-8004.889.1 at 837.422 kb on + strand, within Xcc-8004.889.1 at 837.422 kb on + strand, within Xcc-8004.889.1 at 837.423 kb on - strand, within Xcc-8004.889.1 at 837.423 kb on - strand, within Xcc-8004.889.1 at 837.423 kb on - strand, within Xcc-8004.889.1 at 837.424 kb on + strand, within Xcc-8004.889.1 at 837.425 kb on - strand, within Xcc-8004.889.1 at 838.669 kb on + strand at 838.754 kb on + strand, within Xcc-8004.892.1 at 838.761 kb on + strand, within Xcc-8004.892.1 at 838.842 kb on + strand, within Xcc-8004.892.1 at 838.882 kb on - strand, within Xcc-8004.892.1 at 839.091 kb on + strand, within Xcc-8004.892.1 at 839.347 kb on - strand, within Xcc-8004.892.1 at 839.451 kb on + strand, within Xcc-8004.892.1 at 839.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 836,946 - Xcc-8004.889.1 0.19 +0.5 837,013 - Xcc-8004.889.1 0.29 +0.3 837,013 - Xcc-8004.889.1 0.29 -1.5 837,013 - Xcc-8004.889.1 0.29 +0.1 837,422 + Xcc-8004.889.1 0.86 +0.4 837,422 + Xcc-8004.889.1 0.86 +1.3 837,423 - Xcc-8004.889.1 0.86 +0.1 837,423 - Xcc-8004.889.1 0.86 -0.7 837,423 - Xcc-8004.889.1 0.86 -0.3 837,424 + Xcc-8004.889.1 0.86 +1.0 837,425 - Xcc-8004.889.1 0.87 -0.6 838,669 + -0.7 838,754 + Xcc-8004.892.1 0.21 +1.8 838,761 + Xcc-8004.892.1 0.21 -0.4 838,842 + Xcc-8004.892.1 0.28 -1.6 838,882 - Xcc-8004.892.1 0.31 -1.0 839,091 + Xcc-8004.892.1 0.49 -1.2 839,347 - Xcc-8004.892.1 0.70 +0.3 839,451 + Xcc-8004.892.1 0.78 -0.8 839,669 - +1.0
Or see this region's nucleotide sequence