Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.809.1 and Xcc-8004.810.1 are separated by 10 nucleotides Xcc-8004.810.1 and Xcc-8004.811.1 are separated by 154 nucleotides Xcc-8004.811.1 and Xcc-8004.812.1 are separated by 632 nucleotides
Xcc-8004.809.1: Xcc-8004.809.1 - FIG003003: hypothetical protein, at 752,672 to 753,463
Xcc-8004.809.1
Xcc-8004.810.1: Xcc-8004.810.1 - Endonuclease, at 753,474 to 754,301
Xcc-8004.810.1
Xcc-8004.811.1: Xcc-8004.811.1 - FIG01211260: hypothetical protein, at 754,456 to 755,466
Xcc-8004.811.1
Xcc-8004.812.1: Xcc-8004.812.1 - histidine kinase-response regulator hybrid protein, at 756,099 to 757,046
Xcc-8004.812.1
Position (kb) 754
755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 753.473 kb on + strand at 753.473 kb on + strand at 753.474 kb on - strand at 753.474 kb on - strand at 753.474 kb on - strand at 753.540 kb on - strand at 753.834 kb on + strand, within Xcc-8004.810.1 at 753.835 kb on - strand, within Xcc-8004.810.1 at 753.879 kb on + strand, within Xcc-8004.810.1 at 753.880 kb on - strand, within Xcc-8004.810.1 at 753.880 kb on - strand, within Xcc-8004.810.1 at 754.117 kb on - strand, within Xcc-8004.810.1 at 754.117 kb on - strand, within Xcc-8004.810.1 at 754.117 kb on - strand, within Xcc-8004.810.1 at 754.131 kb on + strand, within Xcc-8004.810.1 at 754.132 kb on - strand, within Xcc-8004.810.1 at 754.132 kb on - strand, within Xcc-8004.810.1 at 754.425 kb on + strand at 754.425 kb on + strand at 754.426 kb on - strand at 754.426 kb on - strand at 754.546 kb on + strand at 754.546 kb on + strand at 754.546 kb on + strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.597 kb on + strand, within Xcc-8004.811.1 at 754.597 kb on + strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.795 kb on + strand, within Xcc-8004.811.1 at 754.796 kb on - strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.156 kb on - strand, within Xcc-8004.811.1 at 755.402 kb on - strand at 755.484 kb on + strand at 755.504 kb on - strand at 755.504 kb on - strand at 755.627 kb on - strand at 755.644 kb on + strand at 755.644 kb on + strand at 755.644 kb on + strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.654 kb on - strand at 755.673 kb on + strand at 755.673 kb on + strand at 755.674 kb on - strand at 755.674 kb on - strand at 755.751 kb on + strand at 755.751 kb on + strand at 755.751 kb on + strand at 755.752 kb on - strand at 755.752 kb on - strand at 755.752 kb on - strand at 755.818 kb on + strand at 755.818 kb on + strand at 755.819 kb on - strand at 755.819 kb on - strand at 755.819 kb on - strand at 755.839 kb on - strand at 756.012 kb on - strand at 756.046 kb on + strand at 756.047 kb on - strand at 756.081 kb on - strand at 756.081 kb on - strand at 756.081 kb on - strand at 756.081 kb on - strand at 756.200 kb on - strand, within Xcc-8004.812.1 at 756.200 kb on - strand, within Xcc-8004.812.1 at 756.200 kb on - strand, within Xcc-8004.812.1 at 756.211 kb on - strand, within Xcc-8004.812.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 753,473 + -0.5 753,473 + -0.5 753,474 - -0.1 753,474 - +0.0 753,474 - +0.5 753,540 - -0.0 753,834 + Xcc-8004.810.1 0.43 +0.2 753,835 - Xcc-8004.810.1 0.44 +0.6 753,879 + Xcc-8004.810.1 0.49 +0.6 753,880 - Xcc-8004.810.1 0.49 -0.7 753,880 - Xcc-8004.810.1 0.49 +0.8 754,117 - Xcc-8004.810.1 0.78 -0.4 754,117 - Xcc-8004.810.1 0.78 +0.0 754,117 - Xcc-8004.810.1 0.78 -0.1 754,131 + Xcc-8004.810.1 0.79 -0.3 754,132 - Xcc-8004.810.1 0.79 -0.5 754,132 - Xcc-8004.810.1 0.79 +0.5 754,425 + -0.4 754,425 + -0.4 754,426 - -1.2 754,426 - +0.6 754,546 + +1.2 754,546 + -0.2 754,546 + -3.0 754,547 - -1.7 754,547 - +0.7 754,547 - +0.9 754,547 - -1.6 754,547 - -0.5 754,547 - +1.2 754,597 + Xcc-8004.811.1 0.14 -1.0 754,597 + Xcc-8004.811.1 0.14 +2.0 754,598 - Xcc-8004.811.1 0.14 -1.8 754,598 - Xcc-8004.811.1 0.14 -0.8 754,598 - Xcc-8004.811.1 0.14 +1.2 754,598 - Xcc-8004.811.1 0.14 -0.8 754,795 + Xcc-8004.811.1 0.34 +0.5 754,796 - Xcc-8004.811.1 0.34 -0.2 755,155 + Xcc-8004.811.1 0.69 -1.2 755,155 + Xcc-8004.811.1 0.69 -0.5 755,155 + Xcc-8004.811.1 0.69 -1.2 755,156 - Xcc-8004.811.1 0.69 +0.3 755,402 - -0.9 755,484 + +1.5 755,504 - -0.8 755,504 - -0.5 755,627 - +1.6 755,644 + +0.7 755,644 + -0.6 755,644 + +0.6 755,645 - -0.5 755,645 - +0.1 755,645 - +0.4 755,645 - -0.4 755,645 - +0.5 755,654 - -0.8 755,673 + +1.5 755,673 + +0.0 755,674 - -0.5 755,674 - +0.6 755,751 + +0.5 755,751 + -1.0 755,751 + +0.0 755,752 - +0.4 755,752 - +1.8 755,752 - -1.0 755,818 + -1.1 755,818 + -0.1 755,819 - +0.1 755,819 - -1.9 755,819 - +0.1 755,839 - -0.2 756,012 - +0.9 756,046 + +0.5 756,047 - -0.3 756,081 - -1.3 756,081 - +0.1 756,081 - -0.7 756,081 - -2.1 756,200 - Xcc-8004.812.1 0.11 +3.5 756,200 - Xcc-8004.812.1 0.11 +1.0 756,200 - Xcc-8004.812.1 0.11 +0.2 756,211 - Xcc-8004.812.1 0.12 -0.2
Or see this region's nucleotide sequence