Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.792.1 and Xcc-8004.793.1 are separated by 46 nucleotides Xcc-8004.793.1 and Xcc-8004.794.1 are separated by 22 nucleotides Xcc-8004.794.1 and Xcc-8004.795.1 are separated by 49 nucleotides
Xcc-8004.792.1: Xcc-8004.792.1 - FIG01211403: hypothetical protein, at 736,785 to 737,423
Xcc-8004.792.1
Xcc-8004.793.1: Xcc-8004.793.1 - putative; ORF located using Glimmer/Genemark, at 737,470 to 737,766
Xcc-8004.793.1
Xcc-8004.794.1: Xcc-8004.794.1 - M. jannaschii predicted coding region MJ1233, at 737,789 to 738,991
Xcc-8004.794.1
Xcc-8004.795.1: Xcc-8004.795.1 - Membrane protein, putative, at 739,041 to 739,916
Xcc-8004.795.1
Position (kb) 737
738
739 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 736.844 kb on - strand at 736.850 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.096 kb on - strand, within Xcc-8004.792.1 at 737.096 kb on - strand, within Xcc-8004.792.1 at 737.350 kb on - strand, within Xcc-8004.792.1 at 737.437 kb on + strand at 737.437 kb on + strand at 737.437 kb on + strand at 737.437 kb on + strand at 737.438 kb on - strand at 737.923 kb on - strand, within Xcc-8004.794.1 at 737.923 kb on - strand, within Xcc-8004.794.1 at 737.970 kb on + strand, within Xcc-8004.794.1 at 737.971 kb on - strand, within Xcc-8004.794.1 at 737.971 kb on - strand, within Xcc-8004.794.1 at 737.971 kb on - strand, within Xcc-8004.794.1 at 737.986 kb on - strand, within Xcc-8004.794.1 at 738.225 kb on + strand, within Xcc-8004.794.1 at 738.225 kb on + strand, within Xcc-8004.794.1 at 738.226 kb on - strand, within Xcc-8004.794.1 at 738.441 kb on + strand, within Xcc-8004.794.1 at 738.574 kb on + strand, within Xcc-8004.794.1 at 738.575 kb on - strand, within Xcc-8004.794.1 at 738.630 kb on + strand, within Xcc-8004.794.1 at 738.630 kb on + strand, within Xcc-8004.794.1 at 738.705 kb on + strand, within Xcc-8004.794.1 at 738.705 kb on + strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.742 kb on + strand, within Xcc-8004.794.1 at 738.742 kb on + strand, within Xcc-8004.794.1 at 738.743 kb on - strand, within Xcc-8004.794.1 at 738.770 kb on - strand, within Xcc-8004.794.1 at 738.925 kb on + strand at 738.925 kb on + strand at 738.929 kb on - strand at 738.929 kb on - strand at 738.982 kb on - strand at 739.135 kb on - strand, within Xcc-8004.795.1 at 739.570 kb on - strand, within Xcc-8004.795.1 at 739.644 kb on + strand, within Xcc-8004.795.1 at 739.644 kb on + strand, within Xcc-8004.795.1 at 739.645 kb on - strand, within Xcc-8004.795.1 at 739.645 kb on - strand, within Xcc-8004.795.1 at 739.707 kb on + strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.752 kb on + strand, within Xcc-8004.795.1 at 739.786 kb on - strand, within Xcc-8004.795.1 at 739.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 736,844 - -1.0 736,850 - Xcc-8004.792.1 0.10 -0.6 737,056 - Xcc-8004.792.1 0.42 +0.3 737,056 - Xcc-8004.792.1 0.42 -0.2 737,056 - Xcc-8004.792.1 0.42 -0.1 737,096 - Xcc-8004.792.1 0.49 -0.8 737,096 - Xcc-8004.792.1 0.49 +1.1 737,350 - Xcc-8004.792.1 0.88 +1.5 737,437 + -0.9 737,437 + +0.3 737,437 + +0.3 737,437 + -1.2 737,438 - -2.2 737,923 - Xcc-8004.794.1 0.11 -0.5 737,923 - Xcc-8004.794.1 0.11 +0.2 737,970 + Xcc-8004.794.1 0.15 -1.1 737,971 - Xcc-8004.794.1 0.15 +0.2 737,971 - Xcc-8004.794.1 0.15 +0.1 737,971 - Xcc-8004.794.1 0.15 +0.4 737,986 - Xcc-8004.794.1 0.16 -1.6 738,225 + Xcc-8004.794.1 0.36 -1.5 738,225 + Xcc-8004.794.1 0.36 -0.7 738,226 - Xcc-8004.794.1 0.36 -1.5 738,441 + Xcc-8004.794.1 0.54 -0.0 738,574 + Xcc-8004.794.1 0.65 -1.0 738,575 - Xcc-8004.794.1 0.65 +3.0 738,630 + Xcc-8004.794.1 0.70 -0.4 738,630 + Xcc-8004.794.1 0.70 +0.6 738,705 + Xcc-8004.794.1 0.76 +0.8 738,705 + Xcc-8004.794.1 0.76 +0.4 738,706 - Xcc-8004.794.1 0.76 +0.4 738,706 - Xcc-8004.794.1 0.76 +0.9 738,706 - Xcc-8004.794.1 0.76 +0.4 738,706 - Xcc-8004.794.1 0.76 -0.8 738,742 + Xcc-8004.794.1 0.79 -0.1 738,742 + Xcc-8004.794.1 0.79 -0.8 738,743 - Xcc-8004.794.1 0.79 -0.7 738,770 - Xcc-8004.794.1 0.82 +0.3 738,925 + -1.6 738,925 + -1.4 738,929 - +0.8 738,929 - -0.3 738,982 - +0.3 739,135 - Xcc-8004.795.1 0.11 +0.3 739,570 - Xcc-8004.795.1 0.60 -0.2 739,644 + Xcc-8004.795.1 0.69 +0.3 739,644 + Xcc-8004.795.1 0.69 +0.6 739,645 - Xcc-8004.795.1 0.69 -0.5 739,645 - Xcc-8004.795.1 0.69 +0.6 739,707 + Xcc-8004.795.1 0.76 -0.3 739,708 - Xcc-8004.795.1 0.76 +0.2 739,708 - Xcc-8004.795.1 0.76 -0.3 739,708 - Xcc-8004.795.1 0.76 -1.7 739,752 + Xcc-8004.795.1 0.81 +0.3 739,786 - Xcc-8004.795.1 0.85 -2.0 739,928 + -1.1
Or see this region's nucleotide sequence