Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.683.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.682.1 and Xcc-8004.683.1 are separated by 5 nucleotidesXcc-8004.683.1 and Xcc-8004.684.1 are separated by 600 nucleotides Xcc-8004.682.1: Xcc-8004.682.1 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 626,891 to 629,197 Xcc-8004.682.1 Xcc-8004.683.1: Xcc-8004.683.1 - hypothetical protein, at 629,203 to 629,535 Xcc-8004.683.1 Xcc-8004.684.1: Xcc-8004.684.1 - Extracellular ribonuclease precursor (EC 3.1.-.-), at 630,136 to 631,926 Xcc-8004.684.1 Position (kb) 629 630Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 628.411 kb on - strand, within Xcc-8004.682.1at 628.411 kb on - strand, within Xcc-8004.682.1at 629.159 kb on + strandat 629.160 kb on - strandat 629.244 kb on - strand, within Xcc-8004.683.1at 629.294 kb on + strand, within Xcc-8004.683.1at 629.294 kb on + strand, within Xcc-8004.683.1at 629.295 kb on - strand, within Xcc-8004.683.1at 629.402 kb on + strand, within Xcc-8004.683.1at 629.403 kb on - strand, within Xcc-8004.683.1at 629.550 kb on + strandat 629.550 kb on + strandat 629.550 kb on + strandat 629.550 kb on + strandat 629.550 kb on + strandat 629.550 kb on + strandat 629.550 kb on + strandat 629.550 kb on + strandat 629.551 kb on - strandat 629.551 kb on - strandat 629.551 kb on - strandat 629.551 kb on - strandat 629.551 kb on - strandat 629.551 kb on - strandat 629.551 kb on - strandat 629.659 kb on + strandat 629.660 kb on - strandat 629.660 kb on - strandat 629.660 kb on - strandat 629.660 kb on - strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.807 kb on + strandat 629.808 kb on - strandat 629.808 kb on - strandat 629.808 kb on - strandat 629.808 kb on - strandat 629.808 kb on - strandat 630.006 kb on + strandat 630.006 kb on + strandat 630.007 kb on - strandat 630.007 kb on - strandat 630.323 kb on + strand, within Xcc-8004.684.1at 630.323 kb on + strand, within Xcc-8004.684.1at 630.323 kb on + strand, within Xcc-8004.684.1at 630.323 kb on + strand, within Xcc-8004.684.1at 630.324 kb on - strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.437 kb on + strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1at 630.438 kb on - strand, within Xcc-8004.684.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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628,411 - Xcc-8004.682.1 0.66 -0.2
628,411 - Xcc-8004.682.1 0.66 -0.6
629,159 + +0.1
629,160 - -0.3
629,244 - Xcc-8004.683.1 0.12 +0.7
629,294 + Xcc-8004.683.1 0.27 -0.1
629,294 + Xcc-8004.683.1 0.27 +3.0
629,295 - Xcc-8004.683.1 0.28 -1.2
629,402 + Xcc-8004.683.1 0.60 -1.4
629,403 - Xcc-8004.683.1 0.60 -0.2
629,550 + -0.2
629,550 + -0.5
629,550 + +0.7
629,550 + -0.3
629,550 + +0.5
629,550 + +0.9
629,550 + -0.7
629,550 + -1.2
629,551 - -1.7
629,551 - +3.6
629,551 - -0.4
629,551 - +0.3
629,551 - +0.7
629,551 - -1.0
629,551 - +0.3
629,659 + +0.2
629,660 - -0.4
629,660 - -0.5
629,660 - +0.0
629,660 - -0.4
629,807 + +0.1
629,807 + +1.2
629,807 + -0.4
629,807 + +0.1
629,807 + +0.1
629,807 + -0.4
629,807 + +0.4
629,807 + -0.9
629,807 + +0.4
629,807 + -1.4
629,807 + +0.6
629,807 + -0.0
629,808 - -0.3
629,808 - -0.0
629,808 - -0.8
629,808 - +2.7
629,808 - +0.6
630,006 + +0.2
630,006 + +0.3
630,007 - -0.2
630,007 - -0.2
630,323 + Xcc-8004.684.1 0.10 +0.4
630,323 + Xcc-8004.684.1 0.10 -1.2
630,323 + Xcc-8004.684.1 0.10 -0.5
630,323 + Xcc-8004.684.1 0.10 -0.6
630,324 - Xcc-8004.684.1 0.10 +0.4
630,437 + Xcc-8004.684.1 0.17 -0.1
630,437 + Xcc-8004.684.1 0.17 +0.3
630,437 + Xcc-8004.684.1 0.17 -0.9
630,437 + Xcc-8004.684.1 0.17 +0.1
630,437 + Xcc-8004.684.1 0.17 -0.8
630,437 + Xcc-8004.684.1 0.17 -2.0
630,437 + Xcc-8004.684.1 0.17 -1.0
630,437 + Xcc-8004.684.1 0.17 -0.6
630,437 + Xcc-8004.684.1 0.17 +0.5
630,437 + Xcc-8004.684.1 0.17 +0.2
630,437 + Xcc-8004.684.1 0.17 -1.0
630,437 + Xcc-8004.684.1 0.17 +0.0
630,437 + Xcc-8004.684.1 0.17 +1.1
630,437 + Xcc-8004.684.1 0.17 -2.8
630,437 + Xcc-8004.684.1 0.17 +0.8
630,437 + Xcc-8004.684.1 0.17 +0.2
630,437 + Xcc-8004.684.1 0.17 -0.8
630,437 + Xcc-8004.684.1 0.17 +0.8
630,437 + Xcc-8004.684.1 0.17 -0.6
630,437 + Xcc-8004.684.1 0.17 +0.3
630,437 + Xcc-8004.684.1 0.17 -0.4
630,438 - Xcc-8004.684.1 0.17 -0.7
630,438 - Xcc-8004.684.1 0.17 -1.0
630,438 - Xcc-8004.684.1 0.17 +0.3
630,438 - Xcc-8004.684.1 0.17 -1.8
630,438 - Xcc-8004.684.1 0.17 -1.1
630,438 - Xcc-8004.684.1 0.17 -0.3
630,438 - Xcc-8004.684.1 0.17 +0.3
630,438 - Xcc-8004.684.1 0.17 -0.6
630,438 - Xcc-8004.684.1 0.17 +0.0
630,438 - Xcc-8004.684.1 0.17 +0.3
630,438 - Xcc-8004.684.1 0.17 +0.2
630,438 - Xcc-8004.684.1 0.17 -0.5
630,438 - Xcc-8004.684.1 0.17 -0.9
630,438 - Xcc-8004.684.1 0.17 -0.4

Or see this region's nucleotide sequence