Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.681.1 and Xcc-8004.682.1 are separated by 829 nucleotides Xcc-8004.682.1 and Xcc-8004.683.1 are separated by 5 nucleotides Xcc-8004.683.1 and Xcc-8004.684.1 are separated by 600 nucleotides
Xcc-8004.681.1: Xcc-8004.681.1 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 625,615 to 626,061
Xcc-8004.681.1
Xcc-8004.682.1: Xcc-8004.682.1 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 626,891 to 629,197
Xcc-8004.682.1
Xcc-8004.683.1: Xcc-8004.683.1 - hypothetical protein, at 629,203 to 629,535
Xcc-8004.683.1
Xcc-8004.684.1: Xcc-8004.684.1 - Extracellular ribonuclease precursor (EC 3.1.-.-), at 630,136 to 631,926
Xcc-8004.684.1
Position (kb) 626
627
628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 626.298 kb on + strand at 626.298 kb on + strand at 626.298 kb on + strand at 626.299 kb on - strand at 626.299 kb on - strand at 626.299 kb on - strand at 626.299 kb on - strand at 626.373 kb on + strand at 626.423 kb on + strand at 626.582 kb on + strand at 626.582 kb on + strand at 626.583 kb on - strand at 626.583 kb on - strand at 626.583 kb on - strand at 626.583 kb on - strand at 626.769 kb on - strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.810 kb on + strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.811 kb on - strand at 626.875 kb on - strand at 626.875 kb on - strand at 626.875 kb on - strand at 626.875 kb on - strand at 626.875 kb on - strand at 628.411 kb on - strand, within Xcc-8004.682.1 at 628.411 kb on - strand, within Xcc-8004.682.1 at 629.159 kb on + strand at 629.160 kb on - strand at 629.244 kb on - strand, within Xcc-8004.683.1 at 629.294 kb on + strand, within Xcc-8004.683.1 at 629.294 kb on + strand, within Xcc-8004.683.1 at 629.295 kb on - strand, within Xcc-8004.683.1 at 629.402 kb on + strand, within Xcc-8004.683.1 at 629.403 kb on - strand, within Xcc-8004.683.1 at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.659 kb on + strand at 629.660 kb on - strand at 629.660 kb on - strand at 629.660 kb on - strand at 629.660 kb on - strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.808 kb on - strand at 629.808 kb on - strand at 629.808 kb on - strand at 629.808 kb on - strand at 629.808 kb on - strand at 630.006 kb on + strand at 630.006 kb on + strand at 630.007 kb on - strand at 630.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 626,298 + +0.4 626,298 + -2.1 626,298 + -0.9 626,299 - +0.9 626,299 - -0.1 626,299 - -1.3 626,299 - -0.6 626,373 + -1.6 626,423 + -0.7 626,582 + -0.1 626,582 + +0.2 626,583 - -0.4 626,583 - -0.3 626,583 - +0.5 626,583 - +1.7 626,769 - -0.9 626,810 + -0.4 626,810 + -0.4 626,810 + -1.0 626,810 + +1.3 626,810 + +0.2 626,810 + -2.0 626,810 + -0.5 626,810 + +2.1 626,811 - -0.3 626,811 - -0.4 626,811 - -0.2 626,811 - -0.7 626,811 - -0.6 626,811 - +0.4 626,811 - -0.4 626,875 - -0.2 626,875 - +1.1 626,875 - +1.2 626,875 - -0.3 626,875 - -0.5 628,411 - Xcc-8004.682.1 0.66 -0.2 628,411 - Xcc-8004.682.1 0.66 -0.6 629,159 + +0.1 629,160 - -0.3 629,244 - Xcc-8004.683.1 0.12 +0.7 629,294 + Xcc-8004.683.1 0.27 -0.1 629,294 + Xcc-8004.683.1 0.27 +3.0 629,295 - Xcc-8004.683.1 0.28 -1.2 629,402 + Xcc-8004.683.1 0.60 -1.4 629,403 - Xcc-8004.683.1 0.60 -0.2 629,550 + -0.2 629,550 + -0.5 629,550 + +0.7 629,550 + -0.3 629,550 + +0.5 629,550 + +0.9 629,550 + -0.7 629,550 + -1.2 629,551 - -1.7 629,551 - +3.6 629,551 - -0.4 629,551 - +0.3 629,551 - +0.7 629,551 - -1.0 629,551 - +0.3 629,659 + +0.2 629,660 - -0.4 629,660 - -0.5 629,660 - +0.0 629,660 - -0.4 629,807 + +0.1 629,807 + +1.2 629,807 + -0.4 629,807 + +0.1 629,807 + +0.1 629,807 + -0.4 629,807 + +0.4 629,807 + -0.9 629,807 + +0.4 629,807 + -1.4 629,807 + +0.6 629,807 + -0.0 629,808 - -0.3 629,808 - -0.0 629,808 - -0.8 629,808 - +2.7 629,808 - +0.6 630,006 + +0.2 630,006 + +0.3 630,007 - -0.2 630,007 - -0.2
Or see this region's nucleotide sequence