Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.641.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.639.1 and Xcc-8004.641.1 are separated by 0 nucleotidesXcc-8004.641.1 and Xcc-8004.642.1 are separated by 38 nucleotidesXcc-8004.642.1 and Xcc-8004.643.1 are separated by 126 nucleotides Xcc-8004.639.1: Xcc-8004.639.1 - FIG037127: Two-component system sensor protein, at 582,841 to 585,144 Xcc-8004.639.1 Xcc-8004.641.1: Xcc-8004.641.1 - FIG035830: Two-component system regulatory protein, at 585,145 to 587,097 Xcc-8004.641.1 Xcc-8004.642.1: Xcc-8004.642.1 - FIG034602: Probable transmembrane protein, at 587,136 to 587,762 Xcc-8004.642.1 Xcc-8004.643.1: Xcc-8004.643.1 - FIG071884: Hypothetical protein, at 587,889 to 588,626 Xcc-8004.643.1 Position (kb) 585 586 587 588Strain fitness (log2 ratio) -2 -1 0 1 2 3at 584.255 kb on + strand, within Xcc-8004.639.1at 584.255 kb on + strand, within Xcc-8004.639.1at 584.255 kb on + strand, within Xcc-8004.639.1at 584.255 kb on + strand, within Xcc-8004.639.1at 584.256 kb on - strand, within Xcc-8004.639.1at 584.256 kb on - strand, within Xcc-8004.639.1at 584.256 kb on - strand, within Xcc-8004.639.1at 584.256 kb on - strand, within Xcc-8004.639.1at 584.256 kb on - strand, within Xcc-8004.639.1at 584.639 kb on + strand, within Xcc-8004.639.1at 584.640 kb on - strand, within Xcc-8004.639.1at 584.640 kb on - strand, within Xcc-8004.639.1at 584.982 kb on + strandat 584.982 kb on + strandat 585.659 kb on + strand, within Xcc-8004.641.1at 585.659 kb on + strand, within Xcc-8004.641.1at 585.659 kb on + strand, within Xcc-8004.641.1at 585.660 kb on - strand, within Xcc-8004.641.1at 585.800 kb on + strand, within Xcc-8004.641.1at 585.800 kb on + strand, within Xcc-8004.641.1at 585.800 kb on + strand, within Xcc-8004.641.1at 585.801 kb on - strand, within Xcc-8004.641.1at 585.801 kb on - strand, within Xcc-8004.641.1at 585.810 kb on + strand, within Xcc-8004.641.1at 585.842 kb on + strand, within Xcc-8004.641.1at 585.842 kb on + strand, within Xcc-8004.641.1at 585.843 kb on - strand, within Xcc-8004.641.1at 585.843 kb on - strand, within Xcc-8004.641.1at 585.843 kb on - strand, within Xcc-8004.641.1at 585.911 kb on + strand, within Xcc-8004.641.1at 585.911 kb on + strand, within Xcc-8004.641.1at 585.911 kb on + strand, within Xcc-8004.641.1at 585.911 kb on + strand, within Xcc-8004.641.1at 585.911 kb on + strand, within Xcc-8004.641.1at 585.912 kb on - strand, within Xcc-8004.641.1at 585.912 kb on - strand, within Xcc-8004.641.1at 585.912 kb on - strand, within Xcc-8004.641.1at 585.912 kb on - strand, within Xcc-8004.641.1at 585.912 kb on - strand, within Xcc-8004.641.1at 586.175 kb on + strand, within Xcc-8004.641.1at 586.229 kb on + strand, within Xcc-8004.641.1at 586.229 kb on + strand, within Xcc-8004.641.1at 586.238 kb on + strand, within Xcc-8004.641.1at 586.244 kb on + strand, within Xcc-8004.641.1at 586.245 kb on - strand, within Xcc-8004.641.1at 586.655 kb on + strand, within Xcc-8004.641.1at 586.655 kb on + strand, within Xcc-8004.641.1at 586.656 kb on - strand, within Xcc-8004.641.1at 586.656 kb on - strand, within Xcc-8004.641.1at 586.656 kb on - strand, within Xcc-8004.641.1at 586.781 kb on + strand, within Xcc-8004.641.1at 586.782 kb on - strand, within Xcc-8004.641.1at 587.009 kb on + strandat 587.009 kb on + strandat 587.010 kb on - strandat 587.010 kb on - strandat 587.046 kb on + strandat 587.047 kb on - strandat 587.047 kb on - strandat 587.047 kb on - strandat 587.047 kb on - strandat 587.101 kb on + strandat 587.101 kb on + strandat 587.101 kb on + strandat 587.101 kb on + strandat 587.101 kb on + strandat 587.102 kb on - strandat 587.102 kb on - strandat 587.102 kb on - strandat 587.102 kb on - strandat 587.102 kb on - strandat 587.102 kb on - strandat 587.123 kb on + strandat 587.124 kb on - strandat 587.124 kb on - strandat 587.124 kb on - strandat 587.157 kb on + strandat 587.158 kb on - strandat 587.214 kb on + strand, within Xcc-8004.642.1at 587.214 kb on + strand, within Xcc-8004.642.1at 587.214 kb on + strand, within Xcc-8004.642.1at 587.214 kb on + strand, within Xcc-8004.642.1at 587.214 kb on + strand, within Xcc-8004.642.1at 587.215 kb on - strand, within Xcc-8004.642.1at 587.215 kb on - strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.698 kb on + strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.699 kb on - strand, within Xcc-8004.642.1at 587.792 kb on + strandat 587.793 kb on - strandat 587.793 kb on - strandat 587.848 kb on + strandat 587.848 kb on + strandat 587.848 kb on + strandat 587.849 kb on - strandat 587.849 kb on - strandat 587.849 kb on - strandat 587.897 kb on + strandat 587.897 kb on + strandat 587.897 kb on + strandat 587.898 kb on - strandat 587.898 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
584,255 + Xcc-8004.639.1 0.61 +0.1
584,255 + Xcc-8004.639.1 0.61 +0.0
584,255 + Xcc-8004.639.1 0.61 +1.9
584,255 + Xcc-8004.639.1 0.61 +0.0
584,256 - Xcc-8004.639.1 0.61 +0.1
584,256 - Xcc-8004.639.1 0.61 +1.6
584,256 - Xcc-8004.639.1 0.61 +0.1
584,256 - Xcc-8004.639.1 0.61 -0.4
584,256 - Xcc-8004.639.1 0.61 +1.5
584,639 + Xcc-8004.639.1 0.78 +0.3
584,640 - Xcc-8004.639.1 0.78 -0.2
584,640 - Xcc-8004.639.1 0.78 -0.2
584,982 + -0.3
584,982 + -0.8
585,659 + Xcc-8004.641.1 0.26 -0.9
585,659 + Xcc-8004.641.1 0.26 +0.7
585,659 + Xcc-8004.641.1 0.26 +1.4
585,660 - Xcc-8004.641.1 0.26 +0.2
585,800 + Xcc-8004.641.1 0.34 -0.1
585,800 + Xcc-8004.641.1 0.34 +0.0
585,800 + Xcc-8004.641.1 0.34 +1.1
585,801 - Xcc-8004.641.1 0.34 -0.1
585,801 - Xcc-8004.641.1 0.34 +0.2
585,810 + Xcc-8004.641.1 0.34 +2.3
585,842 + Xcc-8004.641.1 0.36 -1.1
585,842 + Xcc-8004.641.1 0.36 +0.2
585,843 - Xcc-8004.641.1 0.36 -0.0
585,843 - Xcc-8004.641.1 0.36 -0.4
585,843 - Xcc-8004.641.1 0.36 -1.1
585,911 + Xcc-8004.641.1 0.39 -0.1
585,911 + Xcc-8004.641.1 0.39 -0.9
585,911 + Xcc-8004.641.1 0.39 +0.2
585,911 + Xcc-8004.641.1 0.39 -0.7
585,911 + Xcc-8004.641.1 0.39 -0.3
585,912 - Xcc-8004.641.1 0.39 +1.1
585,912 - Xcc-8004.641.1 0.39 +0.0
585,912 - Xcc-8004.641.1 0.39 -1.2
585,912 - Xcc-8004.641.1 0.39 -0.5
585,912 - Xcc-8004.641.1 0.39 +0.6
586,175 + Xcc-8004.641.1 0.53 -0.7
586,229 + Xcc-8004.641.1 0.56 +0.6
586,229 + Xcc-8004.641.1 0.56 -1.1
586,238 + Xcc-8004.641.1 0.56 +0.3
586,244 + Xcc-8004.641.1 0.56 +0.4
586,245 - Xcc-8004.641.1 0.56 +0.5
586,655 + Xcc-8004.641.1 0.77 +1.1
586,655 + Xcc-8004.641.1 0.77 +0.8
586,656 - Xcc-8004.641.1 0.77 +0.4
586,656 - Xcc-8004.641.1 0.77 +1.0
586,656 - Xcc-8004.641.1 0.77 -0.7
586,781 + Xcc-8004.641.1 0.84 -0.9
586,782 - Xcc-8004.641.1 0.84 +0.9
587,009 + -0.3
587,009 + -0.3
587,010 - -0.1
587,010 - +0.4
587,046 + +0.0
587,047 - +1.2
587,047 - -0.1
587,047 - -1.2
587,047 - +1.0
587,101 + -0.8
587,101 + -1.6
587,101 + +1.1
587,101 + +0.3
587,101 + -1.7
587,102 - +0.0
587,102 - +0.0
587,102 - +0.8
587,102 - -2.3
587,102 - +0.5
587,102 - +0.5
587,123 + +1.0
587,124 - +0.8
587,124 - +0.6
587,124 - -0.3
587,157 + -0.1
587,158 - -0.2
587,214 + Xcc-8004.642.1 0.12 +0.5
587,214 + Xcc-8004.642.1 0.12 +0.4
587,214 + Xcc-8004.642.1 0.12 -0.7
587,214 + Xcc-8004.642.1 0.12 +0.7
587,214 + Xcc-8004.642.1 0.12 -0.2
587,215 - Xcc-8004.642.1 0.13 -0.5
587,215 - Xcc-8004.642.1 0.13 -0.8
587,698 + Xcc-8004.642.1 0.90 -0.1
587,698 + Xcc-8004.642.1 0.90 -1.2
587,698 + Xcc-8004.642.1 0.90 -0.3
587,698 + Xcc-8004.642.1 0.90 +1.4
587,699 - Xcc-8004.642.1 0.90 +0.9
587,699 - Xcc-8004.642.1 0.90 -2.4
587,699 - Xcc-8004.642.1 0.90 -1.7
587,699 - Xcc-8004.642.1 0.90 +0.2
587,699 - Xcc-8004.642.1 0.90 -0.2
587,699 - Xcc-8004.642.1 0.90 -2.2
587,699 - Xcc-8004.642.1 0.90 -0.7
587,699 - Xcc-8004.642.1 0.90 -0.9
587,792 + -0.5
587,793 - -0.5
587,793 - +0.4
587,848 + +0.2
587,848 + +0.6
587,848 + +0.8
587,849 - +0.8
587,849 - +0.3
587,849 - +3.6
587,897 + -1.3
587,897 + +0.4
587,897 + -2.7
587,898 - +2.0
587,898 - +0.3

Or see this region's nucleotide sequence