Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.623.1 and Xcc-8004.624.1 are separated by 336 nucleotides Xcc-8004.624.1 and Xcc-8004.625.1 are separated by 137 nucleotides
Xcc-8004.623.1: Xcc-8004.623.1 - Phosphoserine phosphatase, at 574,660 to 575,376
Xcc-8004.623.1
Xcc-8004.624.1: Xcc-8004.624.1 - Cyclic AMP receptor protein, at 575,713 to 576,405
Xcc-8004.624.1
Xcc-8004.625.1: Xcc-8004.625.1 - S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A, at 576,543 to 577,337
Xcc-8004.625.1
Position (kb) 575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 574.730 kb on - strand at 574.871 kb on - strand, within Xcc-8004.623.1 at 574.933 kb on + strand, within Xcc-8004.623.1 at 574.933 kb on + strand, within Xcc-8004.623.1 at 574.934 kb on - strand, within Xcc-8004.623.1 at 575.208 kb on + strand, within Xcc-8004.623.1 at 575.216 kb on - strand, within Xcc-8004.623.1 at 575.312 kb on + strand at 575.312 kb on + strand at 575.375 kb on - strand at 575.401 kb on - strand at 575.418 kb on + strand at 575.419 kb on - strand at 575.419 kb on - strand at 575.528 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.615 kb on + strand at 575.616 kb on - strand at 575.616 kb on - strand at 575.714 kb on + strand at 575.715 kb on - strand at 575.715 kb on - strand at 575.715 kb on - strand at 575.726 kb on + strand at 575.726 kb on + strand at 575.727 kb on - strand at 575.727 kb on - strand at 575.965 kb on - strand, within Xcc-8004.624.1 at 576.002 kb on + strand, within Xcc-8004.624.1 at 576.003 kb on - strand, within Xcc-8004.624.1 at 576.062 kb on + strand, within Xcc-8004.624.1 at 576.063 kb on - strand, within Xcc-8004.624.1 at 576.063 kb on - strand, within Xcc-8004.624.1 at 576.170 kb on + strand, within Xcc-8004.624.1 at 576.171 kb on - strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.239 kb on + strand, within Xcc-8004.624.1 at 576.239 kb on + strand, within Xcc-8004.624.1 at 576.239 kb on + strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.367 kb on + strand at 576.368 kb on - strand at 576.368 kb on - strand at 576.398 kb on - strand at 576.408 kb on + strand at 576.408 kb on + strand at 576.408 kb on + strand at 576.408 kb on + strand at 576.408 kb on + strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.409 kb on - strand at 576.457 kb on - strand at 576.457 kb on - strand at 576.457 kb on - strand at 577.335 kb on + strand at 577.335 kb on + strand at 577.341 kb on + strand at 577.341 kb on + strand at 577.341 kb on + strand at 577.341 kb on + strand at 577.342 kb on - strand at 577.342 kb on - strand at 577.358 kb on + strand at 577.358 kb on + strand at 577.358 kb on + strand at 577.358 kb on + strand at 577.359 kb on - strand at 577.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 574,730 - +1.4 574,871 - Xcc-8004.623.1 0.29 +1.1 574,933 + Xcc-8004.623.1 0.38 -0.3 574,933 + Xcc-8004.623.1 0.38 +0.7 574,934 - Xcc-8004.623.1 0.38 -0.8 575,208 + Xcc-8004.623.1 0.76 -0.3 575,216 - Xcc-8004.623.1 0.78 +1.4 575,312 + +0.4 575,312 + -0.8 575,375 - +0.0 575,401 - -1.6 575,418 + -0.5 575,419 - +0.3 575,419 - -2.4 575,528 + +0.1 575,537 + -0.4 575,537 + +0.5 575,537 + +0.1 575,537 + -0.7 575,537 + -0.2 575,538 - -0.9 575,538 - -0.3 575,538 - -0.9 575,538 - -0.8 575,538 - -0.1 575,538 - -0.3 575,538 - -0.9 575,538 - -1.4 575,538 - -0.2 575,615 + +0.3 575,616 - -0.5 575,616 - +0.4 575,714 + -0.4 575,715 - +0.1 575,715 - -0.5 575,715 - +0.3 575,726 + +1.6 575,726 + +0.3 575,727 - -1.4 575,727 - +1.2 575,965 - Xcc-8004.624.1 0.36 +2.0 576,002 + Xcc-8004.624.1 0.42 +1.4 576,003 - Xcc-8004.624.1 0.42 +0.5 576,062 + Xcc-8004.624.1 0.50 +0.8 576,063 - Xcc-8004.624.1 0.51 +1.4 576,063 - Xcc-8004.624.1 0.51 -0.4 576,170 + Xcc-8004.624.1 0.66 +1.3 576,171 - Xcc-8004.624.1 0.66 +3.0 576,236 + Xcc-8004.624.1 0.75 +1.0 576,236 + Xcc-8004.624.1 0.75 +0.4 576,236 + Xcc-8004.624.1 0.75 +0.6 576,236 + Xcc-8004.624.1 0.75 +0.8 576,236 + Xcc-8004.624.1 0.75 +0.6 576,236 + Xcc-8004.624.1 0.75 +1.2 576,236 + Xcc-8004.624.1 0.75 +0.4 576,236 + Xcc-8004.624.1 0.75 +0.6 576,236 + Xcc-8004.624.1 0.75 +1.3 576,236 + Xcc-8004.624.1 0.75 +0.0 576,237 - Xcc-8004.624.1 0.76 +2.2 576,237 - Xcc-8004.624.1 0.76 -0.2 576,237 - Xcc-8004.624.1 0.76 +0.4 576,237 - Xcc-8004.624.1 0.76 +1.5 576,237 - Xcc-8004.624.1 0.76 -0.3 576,239 + Xcc-8004.624.1 0.76 +1.7 576,239 + Xcc-8004.624.1 0.76 +0.8 576,239 + Xcc-8004.624.1 0.76 +2.6 576,240 - Xcc-8004.624.1 0.76 +0.7 576,240 - Xcc-8004.624.1 0.76 +1.6 576,240 - Xcc-8004.624.1 0.76 +1.7 576,240 - Xcc-8004.624.1 0.76 +0.6 576,363 + +1.6 576,363 + +0.7 576,363 + -0.7 576,363 + +1.5 576,363 + +0.3 576,363 + +0.3 576,363 + +1.0 576,364 - -0.1 576,364 - +0.3 576,364 - +1.1 576,364 - +1.2 576,364 - +0.7 576,364 - -0.7 576,367 + +1.7 576,368 - +1.1 576,368 - -0.4 576,398 - +0.0 576,408 + -1.8 576,408 + -0.7 576,408 + +0.0 576,408 + +1.0 576,408 + +0.1 576,409 - -1.8 576,409 - +0.3 576,409 - +1.2 576,409 - -1.7 576,409 - -1.1 576,409 - +0.3 576,409 - -0.2 576,457 - -0.8 576,457 - -0.8 576,457 - -0.2 577,335 + -0.2 577,335 + -0.0 577,341 + +0.3 577,341 + +0.2 577,341 + +1.4 577,341 + -3.2 577,342 - +0.2 577,342 - -0.4 577,358 + +0.3 577,358 + -0.3 577,358 + -0.3 577,358 + +0.4 577,359 - -1.6 577,359 - -0.3
Or see this region's nucleotide sequence