Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.587.1 and Xcc-8004.588.1 overlap by 4 nucleotides Xcc-8004.588.1 and Xcc-8004.589.1 overlap by 1 nucleotides Xcc-8004.589.1 and Xcc-8004.590.1 are separated by 47 nucleotides
Xcc-8004.587.1: Xcc-8004.587.1 - Na(+) H(+) antiporter subunit D, at 542,951 to 544,510
Xcc-8004.587.1
Xcc-8004.588.1: Xcc-8004.588.1 - Na(+) H(+) antiporter subunit C, at 544,507 to 544,881
Xcc-8004.588.1
Xcc-8004.589.1: Xcc-8004.589.1 - hypothetical protein, at 544,881 to 547,709
Xcc-8004.589.1
Xcc-8004.590.1: Xcc-8004.590.1 - FIG01210288: hypothetical protein, at 547,757 to 548,776
Xcc-8004.590.1
Position (kb) 544
545
546
547
548 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 545.177 kb on - strand, within Xcc-8004.589.1 at 545.693 kb on - strand, within Xcc-8004.589.1 at 545.693 kb on - strand, within Xcc-8004.589.1 at 545.693 kb on - strand, within Xcc-8004.589.1 at 545.693 kb on - strand, within Xcc-8004.589.1 at 547.747 kb on + strand at 547.762 kb on + strand at 547.763 kb on - strand at 547.840 kb on + strand at 547.840 kb on + strand at 547.841 kb on - strand at 547.841 kb on - strand at 547.868 kb on + strand, within Xcc-8004.590.1 at 547.869 kb on - strand, within Xcc-8004.590.1 at 548.324 kb on + strand, within Xcc-8004.590.1 at 548.324 kb on + strand, within Xcc-8004.590.1 at 548.324 kb on + strand, within Xcc-8004.590.1 at 548.325 kb on - strand, within Xcc-8004.590.1 at 548.495 kb on + strand, within Xcc-8004.590.1 at 548.496 kb on - strand, within Xcc-8004.590.1 at 548.525 kb on + strand, within Xcc-8004.590.1 at 548.525 kb on + strand, within Xcc-8004.590.1 at 548.526 kb on - strand, within Xcc-8004.590.1 at 548.579 kb on + strand, within Xcc-8004.590.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 545,177 - Xcc-8004.589.1 0.10 +0.7 545,693 - Xcc-8004.589.1 0.29 -0.5 545,693 - Xcc-8004.589.1 0.29 +0.7 545,693 - Xcc-8004.589.1 0.29 -1.9 545,693 - Xcc-8004.589.1 0.29 -1.3 547,747 + -0.2 547,762 + -0.7 547,763 - +0.1 547,840 + +2.6 547,840 + -0.3 547,841 - +0.7 547,841 - -0.7 547,868 + Xcc-8004.590.1 0.11 -0.6 547,869 - Xcc-8004.590.1 0.11 -0.1 548,324 + Xcc-8004.590.1 0.56 -0.5 548,324 + Xcc-8004.590.1 0.56 +0.5 548,324 + Xcc-8004.590.1 0.56 -1.1 548,325 - Xcc-8004.590.1 0.56 +0.3 548,495 + Xcc-8004.590.1 0.72 +0.4 548,496 - Xcc-8004.590.1 0.72 -0.4 548,525 + Xcc-8004.590.1 0.75 +0.0 548,525 + Xcc-8004.590.1 0.75 +0.3 548,526 - Xcc-8004.590.1 0.75 +3.0 548,579 + Xcc-8004.590.1 0.81 +0.5
Or see this region's nucleotide sequence