Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5202.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,938,116	+		Xcc-8004.5201.1	0.77	-2.2
4,938,117	-		Xcc-8004.5201.1	0.77	-0.0
4,938,117	-		Xcc-8004.5201.1	0.77	-2.5
4,938,117	-		Xcc-8004.5201.1	0.77	+0.9
4,938,117	-		Xcc-8004.5201.1	0.77	-0.8
4,938,117	-		Xcc-8004.5201.1	0.77	-0.9
4,938,235	-				+0.0
4,938,235	-				-0.4
4,938,236	+				-0.4
4,938,237	-				-1.5
4,938,237	-				+0.0
4,938,237	-				+0.2
4,938,324	-				-1.6
4,938,337	+				+1.2
4,938,337	+				+1.8
4,938,337	+				-1.1
4,938,402	-				-2.6
4,938,433	-				+1.5
4,938,490	-				+0.4
4,938,490	-				-0.1
4,938,490	-				-1.4
4,938,490	-				-0.8
4,938,490	-				-2.3
4,938,490	-				-0.9
4,938,490	-				-1.2
4,938,549	-				+0.7
4,938,561	-				+1.0
4,938,561	-				+0.9
4,938,561	-				+0.4
4,938,561	-				+0.6
4,938,585	+				-0.3
4,938,586	-				-0.1
4,938,586	-				-0.2
4,938,586	-				+0.3
4,938,586	-				+1.3
4,938,609	+				+0.0
4,938,609	+				-0.9
4,938,609	+				-0.7
4,938,610	-				-0.1
4,938,610	-				-1.0
4,938,639	-				+0.4
4,938,700	+				-0.1
4,938,700	+				+0.6
4,938,700	+				+0.6
4,938,700	+				-1.7
4,938,700	+				-0.5
4,938,700	+				+0.4
4,938,700	+				+0.2
4,938,701	-				-0.5
4,938,701	-				-0.5
4,938,701	-				-0.2
4,938,701	-				+0.3
4,938,748	+				-0.4
4,938,841	+		Xcc-8004.5202.1	0.19	-0.1
4,938,984	-		Xcc-8004.5202.1	0.39	+0.9
4,939,048	+		Xcc-8004.5202.1	0.47	+0.1
4,939,048	+		Xcc-8004.5202.1	0.47	+1.5
4,939,048	+		Xcc-8004.5202.1	0.47	-2.4
4,939,048	+		Xcc-8004.5202.1	0.47	+0.5
4,939,049	-		Xcc-8004.5202.1	0.47	+1.0
4,939,049	-		Xcc-8004.5202.1	0.47	+0.5
4,939,049	-		Xcc-8004.5202.1	0.47	+0.7
4,939,049	-		Xcc-8004.5202.1	0.47	+2.5
4,939,070	-		Xcc-8004.5202.1	0.50	+1.7
4,939,126	+		Xcc-8004.5202.1	0.58	+0.0
4,939,126	+		Xcc-8004.5202.1	0.58	+1.5
4,939,127	-		Xcc-8004.5202.1	0.58	-1.9
4,939,127	-		Xcc-8004.5202.1	0.58	-3.0
4,939,127	-		Xcc-8004.5202.1	0.58	-0.3
4,939,159	+		Xcc-8004.5202.1	0.62	+0.4
4,939,159	+		Xcc-8004.5202.1	0.62	+0.0
4,939,301	-		Xcc-8004.5202.1	0.82	+0.7
4,939,783	+		Xcc-8004.5203.1	0.60	-1.0
4,939,783	+		Xcc-8004.5203.1	0.60	+1.1
4,939,784	-		Xcc-8004.5203.1	0.60	+0.6
4,940,287	+				+1.5
4,940,288	-				+0.2
4,940,288	-				-0.1
4,940,288	-				+0.6