Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.498.1 and Xcc-8004.500.1 are separated by 96 nucleotides Xcc-8004.500.1 and Xcc-8004.501.1 are separated by 287 nucleotides Xcc-8004.501.1 and Xcc-8004.502.1 are separated by 16 nucleotides
Xcc-8004.498.1: Xcc-8004.498.1 - Biotin synthesis protein BioC, at 457,378 to 458,262
Xcc-8004.498.1
Xcc-8004.500.1: Xcc-8004.500.1 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 458,359 to 459,141
Xcc-8004.500.1
Xcc-8004.501.1: Xcc-8004.501.1 - hypothetical protein, at 459,429 to 459,917
Xcc-8004.501.1
Xcc-8004.502.1: Xcc-8004.502.1 - Biotin synthesis protein BioH, at 459,934 to 460,695
Xcc-8004.502.1
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 457.379 kb on + strand at 457.379 kb on + strand at 457.379 kb on + strand at 457.379 kb on + strand at 457.380 kb on - strand at 457.380 kb on - strand at 457.380 kb on - strand at 457.380 kb on - strand at 457.380 kb on - strand at 457.380 kb on - strand at 457.539 kb on - strand, within Xcc-8004.498.1 at 457.655 kb on + strand, within Xcc-8004.498.1 at 458.201 kb on + strand at 458.202 kb on - strand at 458.202 kb on - strand at 458.202 kb on - strand at 458.271 kb on + strand at 458.272 kb on - strand at 458.414 kb on + strand at 458.415 kb on - strand at 458.962 kb on + strand, within Xcc-8004.500.1 at 458.963 kb on - strand, within Xcc-8004.500.1 at 458.963 kb on - strand, within Xcc-8004.500.1 at 458.963 kb on - strand, within Xcc-8004.500.1 at 459.106 kb on + strand at 459.106 kb on + strand at 459.106 kb on + strand at 459.106 kb on + strand at 459.106 kb on + strand at 459.106 kb on + strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.382 kb on + strand at 459.382 kb on + strand at 459.382 kb on + strand at 459.382 kb on + strand at 459.382 kb on + strand at 459.383 kb on - strand at 459.383 kb on - strand at 459.383 kb on - strand at 459.386 kb on + strand at 459.484 kb on - strand, within Xcc-8004.501.1 at 459.549 kb on + strand, within Xcc-8004.501.1 at 459.549 kb on + strand, within Xcc-8004.501.1 at 459.549 kb on + strand, within Xcc-8004.501.1 at 459.550 kb on - strand, within Xcc-8004.501.1 at 459.550 kb on - strand, within Xcc-8004.501.1 at 459.716 kb on + strand, within Xcc-8004.501.1 at 459.716 kb on + strand, within Xcc-8004.501.1 at 459.716 kb on + strand, within Xcc-8004.501.1 at 459.716 kb on + strand, within Xcc-8004.501.1 at 459.716 kb on + strand, within Xcc-8004.501.1 at 459.717 kb on - strand, within Xcc-8004.501.1 at 459.717 kb on - strand, within Xcc-8004.501.1 at 459.717 kb on - strand, within Xcc-8004.501.1 at 459.755 kb on + strand, within Xcc-8004.501.1 at 459.755 kb on + strand, within Xcc-8004.501.1 at 459.755 kb on + strand, within Xcc-8004.501.1 at 459.755 kb on + strand, within Xcc-8004.501.1 at 459.756 kb on - strand, within Xcc-8004.501.1 at 459.756 kb on - strand, within Xcc-8004.501.1 at 459.756 kb on - strand, within Xcc-8004.501.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 457,379 + +0.7 457,379 + -0.0 457,379 + -1.1 457,379 + -0.1 457,380 - +0.5 457,380 - +0.8 457,380 - -1.5 457,380 - +1.5 457,380 - +0.8 457,380 - +2.0 457,539 - Xcc-8004.498.1 0.18 -0.7 457,655 + Xcc-8004.498.1 0.31 +3.6 458,201 + +1.1 458,202 - +0.8 458,202 - -1.5 458,202 - +0.5 458,271 + -0.4 458,272 - +0.1 458,414 + +0.1 458,415 - +0.2 458,962 + Xcc-8004.500.1 0.77 -0.9 458,963 - Xcc-8004.500.1 0.77 -1.2 458,963 - Xcc-8004.500.1 0.77 -1.1 458,963 - Xcc-8004.500.1 0.77 -0.2 459,106 + +0.7 459,106 + +1.0 459,106 + -0.2 459,106 + +1.3 459,106 + -0.3 459,106 + +0.0 459,107 - -0.8 459,107 - -0.5 459,107 - +0.0 459,107 - -0.8 459,107 - -0.8 459,107 - -0.8 459,107 - -0.3 459,107 - -0.7 459,107 - +0.1 459,107 - +0.4 459,107 - +0.1 459,382 + -0.5 459,382 + +0.9 459,382 + +0.6 459,382 + -0.1 459,382 + -1.0 459,383 - +0.9 459,383 - +0.5 459,383 - +0.1 459,386 + -0.1 459,484 - Xcc-8004.501.1 0.11 -1.2 459,549 + Xcc-8004.501.1 0.25 -0.8 459,549 + Xcc-8004.501.1 0.25 +0.3 459,549 + Xcc-8004.501.1 0.25 -1.6 459,550 - Xcc-8004.501.1 0.25 -0.6 459,550 - Xcc-8004.501.1 0.25 -1.1 459,716 + Xcc-8004.501.1 0.59 -2.1 459,716 + Xcc-8004.501.1 0.59 +0.1 459,716 + Xcc-8004.501.1 0.59 -0.8 459,716 + Xcc-8004.501.1 0.59 -0.5 459,716 + Xcc-8004.501.1 0.59 -1.1 459,717 - Xcc-8004.501.1 0.59 -0.5 459,717 - Xcc-8004.501.1 0.59 -0.6 459,717 - Xcc-8004.501.1 0.59 -0.8 459,755 + Xcc-8004.501.1 0.67 +0.9 459,755 + Xcc-8004.501.1 0.67 +0.1 459,755 + Xcc-8004.501.1 0.67 -1.1 459,755 + Xcc-8004.501.1 0.67 -0.4 459,756 - Xcc-8004.501.1 0.67 -0.3 459,756 - Xcc-8004.501.1 0.67 -1.8 459,756 - Xcc-8004.501.1 0.67 +0.8
Or see this region's nucleotide sequence