Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4999.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,737,570	+		Xcc-8004.4994.1	0.24	-1.8
4,737,570	+		Xcc-8004.4994.1	0.24	+0.1
4,737,570	+		Xcc-8004.4994.1	0.24	-0.6
4,737,570	+		Xcc-8004.4994.1	0.24	+0.5
4,737,570	+		Xcc-8004.4994.1	0.24	-0.2
4,737,570	+		Xcc-8004.4994.1	0.24	-2.0
4,737,571	-		Xcc-8004.4994.1	0.24	-0.4
4,737,571	-		Xcc-8004.4994.1	0.24	-0.8
4,737,642	+		Xcc-8004.4994.1	0.41	-0.3
4,737,642	+		Xcc-8004.4994.1	0.41	-0.9
4,737,642	+		Xcc-8004.4994.1	0.41	-1.7
4,737,643	-		Xcc-8004.4994.1	0.41	-0.2
4,737,643	-		Xcc-8004.4994.1	0.41	-0.3
4,737,643	-		Xcc-8004.4994.1	0.41	-1.1
4,737,643	-		Xcc-8004.4994.1	0.41	+1.0
4,737,690	+		Xcc-8004.4994.1	0.52	+1.8
4,737,690	+		Xcc-8004.4994.1	0.52	+0.3
4,737,691	-		Xcc-8004.4994.1	0.52	+0.4
4,737,691	-		Xcc-8004.4994.1	0.52	-0.9
4,737,691	-		Xcc-8004.4994.1	0.52	-0.0
4,737,691	-		Xcc-8004.4994.1	0.52	-0.5
4,737,691	-		Xcc-8004.4994.1	0.52	+0.4
4,737,691	-		Xcc-8004.4994.1	0.52	-0.0
4,737,691	-		Xcc-8004.4994.1	0.52	+1.0
4,737,968	+				-1.1
4,737,968	+				+0.2
4,737,969	-				-0.7
4,737,969	-				+0.1
4,737,969	-				+0.7
4,737,969	-				+0.7
4,738,031	+				-1.1
4,738,031	+				-1.0
4,738,031	+				+0.8
4,738,031	+				-1.6
4,738,031	+				-1.1
4,738,031	+				-0.1
4,738,032	-				-0.8
4,738,032	-				+0.2
4,738,032	-				-0.1
4,738,032	-				+0.9
4,738,032	-				-1.5
4,738,032	-				+0.3
4,738,220	+		Xcc-8004.4996.1	0.55	-0.1
4,738,220	+		Xcc-8004.4996.1	0.55	-2.3
4,738,220	+		Xcc-8004.4996.1	0.55	-1.5
4,738,220	+		Xcc-8004.4996.1	0.55	-0.5
4,738,220	+		Xcc-8004.4996.1	0.55	-0.9
4,738,220	+		Xcc-8004.4996.1	0.55	+0.9
4,738,220	+		Xcc-8004.4996.1	0.55	+0.2
4,738,220	+		Xcc-8004.4996.1	0.55	+0.9
4,738,220	+		Xcc-8004.4996.1	0.55	-1.6
4,738,220	+		Xcc-8004.4996.1	0.55	-1.1
4,738,220	+		Xcc-8004.4996.1	0.55	-1.5
4,738,220	+		Xcc-8004.4996.1	0.55	+0.4
4,738,220	+		Xcc-8004.4996.1	0.55	+0.0
4,738,221	-		Xcc-8004.4996.1	0.56	-0.2
4,738,221	-		Xcc-8004.4996.1	0.56	-0.3
4,738,221	-		Xcc-8004.4996.1	0.56	+0.4
4,738,221	-		Xcc-8004.4996.1	0.56	-0.5
4,738,221	-		Xcc-8004.4996.1	0.56	+1.1
4,738,221	-		Xcc-8004.4996.1	0.56	-0.4
4,738,221	-		Xcc-8004.4996.1	0.56	+0.9
4,738,221	-		Xcc-8004.4996.1	0.56	+0.1
4,738,221	-		Xcc-8004.4996.1	0.56	-1.0
4,738,221	-		Xcc-8004.4996.1	0.56	+1.5
4,738,452	+				-0.5
4,738,452	+				-0.4
4,738,452	+				-0.6
4,738,452	+				-1.3
4,738,452	+				+0.8
4,738,453	-				-0.9
4,738,453	-				+0.5
4,738,453	-				+1.3
4,738,453	-				-0.7
4,738,453	-				-0.2
4,738,453	-				-0.2
4,738,453	-				-0.6
4,738,453	-				+0.4
4,738,564	+				+0.7
4,738,565	-				+1.5
4,738,565	-				-0.9
4,738,565	-				+0.2
4,738,584	+				-0.5
4,738,584	+				+0.6
4,738,584	+				+0.5
4,738,585	-				+0.5
4,738,585	-				+0.8
4,738,585	-				+0.4
4,738,756	+		Xcc-8004.4999.1	0.26	-0.8
4,738,757	-		Xcc-8004.4999.1	0.26	-0.2
4,738,801	+		Xcc-8004.4999.1	0.32	-0.3
4,738,801	+		Xcc-8004.4999.1	0.32	-0.9
4,738,801	+		Xcc-8004.4999.1	0.32	+0.3
4,738,801	+		Xcc-8004.4999.1	0.32	+0.6
4,738,801	+		Xcc-8004.4999.1	0.32	+0.8
4,738,801	+		Xcc-8004.4999.1	0.32	+0.4
4,738,801	+		Xcc-8004.4999.1	0.32	-1.3
4,738,801	+		Xcc-8004.4999.1	0.32	+0.6
4,738,801	+		Xcc-8004.4999.1	0.32	+0.5
4,738,802	-		Xcc-8004.4999.1	0.32	+0.5
4,738,802	-		Xcc-8004.4999.1	0.32	-1.8
4,738,802	-		Xcc-8004.4999.1	0.32	-1.0
4,738,802	-		Xcc-8004.4999.1	0.32	-1.1
4,738,802	-		Xcc-8004.4999.1	0.32	+0.0
4,738,802	-		Xcc-8004.4999.1	0.32	+0.2
4,738,802	-		Xcc-8004.4999.1	0.32	-0.1
4,738,802	-		Xcc-8004.4999.1	0.32	-0.2
4,738,802	-		Xcc-8004.4999.1	0.32	+0.9
4,738,802	-		Xcc-8004.4999.1	0.32	+1.3
4,738,802	-		Xcc-8004.4999.1	0.32	+0.7
4,738,802	-		Xcc-8004.4999.1	0.32	-0.1
4,738,802	-		Xcc-8004.4999.1	0.32	+0.9
4,738,804	+		Xcc-8004.4999.1	0.33	+0.6
4,738,805	-		Xcc-8004.4999.1	0.33	-1.4
4,738,805	-		Xcc-8004.4999.1	0.33	-0.6
4,738,805	-		Xcc-8004.4999.1	0.33	-0.6
4,738,892	+		Xcc-8004.4999.1	0.45	+0.1
4,738,892	+		Xcc-8004.4999.1	0.45	+0.4
4,738,892	+		Xcc-8004.4999.1	0.45	-3.2
4,738,892	+		Xcc-8004.4999.1	0.45	-0.2
4,738,892	+		Xcc-8004.4999.1	0.45	-0.1
4,738,892	+		Xcc-8004.4999.1	0.45	+0.4
4,738,893	-		Xcc-8004.4999.1	0.45	-2.9
4,738,893	-		Xcc-8004.4999.1	0.45	-0.9
4,738,893	-		Xcc-8004.4999.1	0.45	-0.2
4,738,893	-		Xcc-8004.4999.1	0.45	-0.6
4,738,893	-		Xcc-8004.4999.1	0.45	+1.5
4,738,893	-		Xcc-8004.4999.1	0.45	+0.1
4,738,988	-		Xcc-8004.4999.1	0.58	-1.1
4,739,003	+		Xcc-8004.4999.1	0.60	-0.7
4,739,003	+		Xcc-8004.4999.1	0.60	-0.7
4,739,003	+		Xcc-8004.4999.1	0.60	+1.3
4,739,004	-		Xcc-8004.4999.1	0.60	+0.2
4,739,004	-		Xcc-8004.4999.1	0.60	+0.2
4,739,004	-		Xcc-8004.4999.1	0.60	+3.0
4,739,004	-		Xcc-8004.4999.1	0.60	-2.4
4,739,340	+				-0.7
4,739,340	+				-0.2
4,739,340	+				-1.7
4,739,341	-				-0.2
4,739,341	-				+1.2
4,739,341	-				-0.0
4,739,341	-				-1.8
4,739,341	-				+1.3
4,739,341	-				+0.3
4,739,344	+				+0.1
4,739,344	+				-1.6
4,739,344	+				-0.9
4,739,344	+				-0.5
4,739,344	+				-0.5
4,739,344	+				+0.0
4,739,344	+				+0.3
4,739,344	+				+1.3
4,739,344	+				+0.5
4,739,344	+				-1.5
4,739,344	+				+0.6
4,739,344	+				-0.7
4,739,344	+				-0.1
4,739,345	-				-0.9
4,739,345	-				-0.9
4,739,345	-				-0.8
4,739,345	-				-3.0
4,739,345	-				+0.3
4,739,345	-				-1.2
4,739,345	-				-1.9
4,739,345	-				+0.2
4,739,345	-				-1.2
4,739,345	-				-1.8
4,739,345	-				+0.3
4,739,345	-				-1.2