Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4963.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4962.1 and Xcc-8004.4963.1 are separated by 268 nucleotidesXcc-8004.4963.1 and Xcc-8004.4965.1 are separated by 446 nucleotides Xcc-8004.4962.1: Xcc-8004.4962.1 - sensor histidine kinase, at 4,713,072 to 4,714,382 Xcc-8004.4962.1 Xcc-8004.4963.1: Xcc-8004.4963.1 - Acriflavin resistance protein, at 4,714,651 to 4,715,889 Xcc-8004.4963.1 Xcc-8004.4965.1: Xcc-8004.4965.1 - Methionine ABC transporter ATP-binding protein, at 4,716,336 to 4,717,025 Xcc-8004.4965.1 Position (kb) 4714 4715 4716Strain fitness (log2 ratio) -2 -1 0 1 2at 4713.763 kb on + strand, within Xcc-8004.4962.1at 4713.763 kb on + strand, within Xcc-8004.4962.1at 4713.763 kb on + strand, within Xcc-8004.4962.1at 4713.763 kb on + strand, within Xcc-8004.4962.1at 4713.763 kb on + strand, within Xcc-8004.4962.1at 4713.763 kb on + strand, within Xcc-8004.4962.1at 4713.763 kb on + strand, within Xcc-8004.4962.1at 4713.764 kb on - strand, within Xcc-8004.4962.1at 4713.764 kb on - strand, within Xcc-8004.4962.1at 4713.764 kb on - strand, within Xcc-8004.4962.1at 4713.764 kb on - strand, within Xcc-8004.4962.1at 4713.857 kb on - strand, within Xcc-8004.4962.1at 4713.857 kb on - strand, within Xcc-8004.4962.1at 4713.946 kb on + strand, within Xcc-8004.4962.1at 4713.946 kb on + strand, within Xcc-8004.4962.1at 4713.946 kb on + strand, within Xcc-8004.4962.1at 4713.946 kb on + strand, within Xcc-8004.4962.1at 4713.946 kb on + strand, within Xcc-8004.4962.1at 4713.947 kb on - strand, within Xcc-8004.4962.1at 4713.947 kb on - strand, within Xcc-8004.4962.1at 4713.947 kb on - strand, within Xcc-8004.4962.1at 4713.964 kb on + strand, within Xcc-8004.4962.1at 4713.964 kb on + strand, within Xcc-8004.4962.1at 4713.964 kb on + strand, within Xcc-8004.4962.1at 4713.964 kb on + strand, within Xcc-8004.4962.1at 4713.964 kb on + strand, within Xcc-8004.4962.1at 4713.964 kb on + strand, within Xcc-8004.4962.1at 4713.965 kb on - strand, within Xcc-8004.4962.1at 4713.965 kb on - strand, within Xcc-8004.4962.1at 4713.965 kb on - strand, within Xcc-8004.4962.1at 4714.015 kb on + strand, within Xcc-8004.4962.1at 4714.016 kb on - strand, within Xcc-8004.4962.1at 4714.016 kb on - strand, within Xcc-8004.4962.1at 4714.016 kb on - strand, within Xcc-8004.4962.1at 4714.016 kb on - strand, within Xcc-8004.4962.1at 4714.016 kb on - strand, within Xcc-8004.4962.1at 4714.016 kb on - strand, within Xcc-8004.4962.1at 4714.051 kb on + strand, within Xcc-8004.4962.1at 4714.051 kb on + strand, within Xcc-8004.4962.1at 4714.051 kb on + strand, within Xcc-8004.4962.1at 4714.108 kb on + strand, within Xcc-8004.4962.1at 4714.109 kb on - strand, within Xcc-8004.4962.1at 4714.164 kb on + strand, within Xcc-8004.4962.1at 4714.164 kb on + strand, within Xcc-8004.4962.1at 4714.164 kb on + strand, within Xcc-8004.4962.1at 4714.164 kb on + strand, within Xcc-8004.4962.1at 4714.165 kb on - strand, within Xcc-8004.4962.1at 4714.165 kb on - strand, within Xcc-8004.4962.1at 4714.165 kb on - strand, within Xcc-8004.4962.1at 4714.165 kb on - strand, within Xcc-8004.4962.1at 4714.165 kb on - strand, within Xcc-8004.4962.1at 4714.165 kb on - strand, within Xcc-8004.4962.1at 4714.343 kb on + strandat 4714.344 kb on - strandat 4714.378 kb on + strandat 4714.378 kb on + strandat 4714.378 kb on + strandat 4714.378 kb on + strandat 4714.378 kb on + strandat 4714.378 kb on + strandat 4714.378 kb on + strandat 4714.378 kb on + strandat 4714.379 kb on - strandat 4714.379 kb on - strandat 4714.379 kb on - strandat 4714.379 kb on - strandat 4714.379 kb on - strandat 4714.379 kb on - strandat 4714.458 kb on + strandat 4714.458 kb on + strandat 4714.458 kb on + strandat 4714.458 kb on + strandat 4714.459 kb on - strandat 4714.459 kb on - strandat 4714.459 kb on - strandat 4714.575 kb on + strandat 4714.575 kb on + strandat 4714.575 kb on + strandat 4714.576 kb on - strandat 4714.576 kb on - strandat 4714.879 kb on + strand, within Xcc-8004.4963.1at 4714.879 kb on + strand, within Xcc-8004.4963.1at 4714.880 kb on - strand, within Xcc-8004.4963.1at 4714.880 kb on - strand, within Xcc-8004.4963.1at 4714.880 kb on - strand, within Xcc-8004.4963.1at 4715.123 kb on + strand, within Xcc-8004.4963.1at 4715.153 kb on - strand, within Xcc-8004.4963.1at 4715.223 kb on - strand, within Xcc-8004.4963.1at 4715.298 kb on + strand, within Xcc-8004.4963.1at 4715.428 kb on + strand, within Xcc-8004.4963.1at 4715.428 kb on + strand, within Xcc-8004.4963.1at 4715.428 kb on + strand, within Xcc-8004.4963.1at 4715.428 kb on + strand, within Xcc-8004.4963.1at 4715.428 kb on + strand, within Xcc-8004.4963.1at 4715.429 kb on - strand, within Xcc-8004.4963.1at 4715.429 kb on - strand, within Xcc-8004.4963.1at 4715.914 kb on - strandat 4715.914 kb on - strandat 4715.914 kb on - strandat 4715.934 kb on - strandat 4715.982 kb on + strandat 4716.046 kb on + strandat 4716.046 kb on + strandat 4716.046 kb on + strandat 4716.046 kb on + strandat 4716.055 kb on + strandat 4716.229 kb on + strandat 4716.229 kb on + strandat 4716.375 kb on + strandat 4716.608 kb on - strand, within Xcc-8004.4965.1at 4716.608 kb on - strand, within Xcc-8004.4965.1at 4716.608 kb on - strand, within Xcc-8004.4965.1at 4716.618 kb on + strand, within Xcc-8004.4965.1at 4716.618 kb on + strand, within Xcc-8004.4965.1at 4716.619 kb on - strand, within Xcc-8004.4965.1at 4716.619 kb on - strand, within Xcc-8004.4965.1at 4716.619 kb on - strand, within Xcc-8004.4965.1at 4716.619 kb on - strand, within Xcc-8004.4965.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,713,763 + Xcc-8004.4962.1 0.53 +0.5
4,713,763 + Xcc-8004.4962.1 0.53 -0.4
4,713,763 + Xcc-8004.4962.1 0.53 -1.5
4,713,763 + Xcc-8004.4962.1 0.53 +0.3
4,713,763 + Xcc-8004.4962.1 0.53 +0.3
4,713,763 + Xcc-8004.4962.1 0.53 -0.4
4,713,763 + Xcc-8004.4962.1 0.53 +0.1
4,713,764 - Xcc-8004.4962.1 0.53 -0.3
4,713,764 - Xcc-8004.4962.1 0.53 +0.5
4,713,764 - Xcc-8004.4962.1 0.53 +1.0
4,713,764 - Xcc-8004.4962.1 0.53 +0.6
4,713,857 - Xcc-8004.4962.1 0.60 -0.9
4,713,857 - Xcc-8004.4962.1 0.60 +0.3
4,713,946 + Xcc-8004.4962.1 0.67 -0.2
4,713,946 + Xcc-8004.4962.1 0.67 -0.0
4,713,946 + Xcc-8004.4962.1 0.67 +0.2
4,713,946 + Xcc-8004.4962.1 0.67 -0.2
4,713,946 + Xcc-8004.4962.1 0.67 +0.3
4,713,947 - Xcc-8004.4962.1 0.67 +0.0
4,713,947 - Xcc-8004.4962.1 0.67 -0.3
4,713,947 - Xcc-8004.4962.1 0.67 +0.6
4,713,964 + Xcc-8004.4962.1 0.68 +0.2
4,713,964 + Xcc-8004.4962.1 0.68 -2.0
4,713,964 + Xcc-8004.4962.1 0.68 -0.5
4,713,964 + Xcc-8004.4962.1 0.68 +0.4
4,713,964 + Xcc-8004.4962.1 0.68 +0.6
4,713,964 + Xcc-8004.4962.1 0.68 +0.8
4,713,965 - Xcc-8004.4962.1 0.68 -0.1
4,713,965 - Xcc-8004.4962.1 0.68 -0.1
4,713,965 - Xcc-8004.4962.1 0.68 +0.9
4,714,015 + Xcc-8004.4962.1 0.72 -1.2
4,714,016 - Xcc-8004.4962.1 0.72 +0.2
4,714,016 - Xcc-8004.4962.1 0.72 -0.3
4,714,016 - Xcc-8004.4962.1 0.72 +0.4
4,714,016 - Xcc-8004.4962.1 0.72 +0.0
4,714,016 - Xcc-8004.4962.1 0.72 -0.3
4,714,016 - Xcc-8004.4962.1 0.72 +1.1
4,714,051 + Xcc-8004.4962.1 0.75 -0.5
4,714,051 + Xcc-8004.4962.1 0.75 -0.7
4,714,051 + Xcc-8004.4962.1 0.75 +1.0
4,714,108 + Xcc-8004.4962.1 0.79 -1.0
4,714,109 - Xcc-8004.4962.1 0.79 -0.6
4,714,164 + Xcc-8004.4962.1 0.83 +0.8
4,714,164 + Xcc-8004.4962.1 0.83 -1.2
4,714,164 + Xcc-8004.4962.1 0.83 -1.5
4,714,164 + Xcc-8004.4962.1 0.83 +0.4
4,714,165 - Xcc-8004.4962.1 0.83 -1.3
4,714,165 - Xcc-8004.4962.1 0.83 -0.2
4,714,165 - Xcc-8004.4962.1 0.83 -0.7
4,714,165 - Xcc-8004.4962.1 0.83 +0.8
4,714,165 - Xcc-8004.4962.1 0.83 -1.3
4,714,165 - Xcc-8004.4962.1 0.83 +0.5
4,714,343 + -0.1
4,714,344 - +1.0
4,714,378 + -1.6
4,714,378 + +0.7
4,714,378 + -0.2
4,714,378 + -1.3
4,714,378 + -0.8
4,714,378 + -0.3
4,714,378 + -1.0
4,714,378 + -0.7
4,714,379 - +1.3
4,714,379 - -1.6
4,714,379 - +0.3
4,714,379 - -0.0
4,714,379 - +0.2
4,714,379 - -0.3
4,714,458 + +1.1
4,714,458 + +0.1
4,714,458 + -0.4
4,714,458 + -0.1
4,714,459 - +1.6
4,714,459 - -0.2
4,714,459 - +2.6
4,714,575 + -1.6
4,714,575 + +0.3
4,714,575 + -0.8
4,714,576 - +0.2
4,714,576 - -0.1
4,714,879 + Xcc-8004.4963.1 0.18 -1.3
4,714,879 + Xcc-8004.4963.1 0.18 +0.2
4,714,880 - Xcc-8004.4963.1 0.18 -0.7
4,714,880 - Xcc-8004.4963.1 0.18 -1.8
4,714,880 - Xcc-8004.4963.1 0.18 -0.6
4,715,123 + Xcc-8004.4963.1 0.38 -0.1
4,715,153 - Xcc-8004.4963.1 0.41 +0.2
4,715,223 - Xcc-8004.4963.1 0.46 -0.6
4,715,298 + Xcc-8004.4963.1 0.52 +0.1
4,715,428 + Xcc-8004.4963.1 0.63 +0.3
4,715,428 + Xcc-8004.4963.1 0.63 -1.0
4,715,428 + Xcc-8004.4963.1 0.63 -0.2
4,715,428 + Xcc-8004.4963.1 0.63 -1.6
4,715,428 + Xcc-8004.4963.1 0.63 -1.7
4,715,429 - Xcc-8004.4963.1 0.63 -1.0
4,715,429 - Xcc-8004.4963.1 0.63 -0.4
4,715,914 - -0.5
4,715,914 - +0.6
4,715,914 - -2.7
4,715,934 - +0.3
4,715,982 + -1.5
4,716,046 + +0.2
4,716,046 + -0.5
4,716,046 + -0.3
4,716,046 + -1.0
4,716,055 + -0.7
4,716,229 + -0.4
4,716,229 + +0.1
4,716,375 + +0.1
4,716,608 - Xcc-8004.4965.1 0.39 +0.3
4,716,608 - Xcc-8004.4965.1 0.39 -0.6
4,716,608 - Xcc-8004.4965.1 0.39 -0.7
4,716,618 + Xcc-8004.4965.1 0.41 -0.5
4,716,618 + Xcc-8004.4965.1 0.41 -0.6
4,716,619 - Xcc-8004.4965.1 0.41 -0.3
4,716,619 - Xcc-8004.4965.1 0.41 +0.8
4,716,619 - Xcc-8004.4965.1 0.41 +0.6
4,716,619 - Xcc-8004.4965.1 0.41 +0.8

Or see this region's nucleotide sequence