Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4934.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4933.1 and Xcc-8004.4934.1 overlap by 1 nucleotidesXcc-8004.4934.1 and Xcc-8004.4935.1 are separated by 81 nucleotidesXcc-8004.4935.1 and Xcc-8004.4936.1 are separated by 401 nucleotidesXcc-8004.4936.1 and Xcc-8004.4937.1 are separated by 30 nucleotides Xcc-8004.4933.1: Xcc-8004.4933.1 - Hydrolase or peptidase, at 4,690,243 to 4,691,112 Xcc-8004.4933.1 Xcc-8004.4934.1: Xcc-8004.4934.1 - Biotin carboxylase (EC 6.3.4.14), at 4,691,112 to 4,692,224 Xcc-8004.4934.1 Xcc-8004.4935.1: Xcc-8004.4935.1 - FIG01213190: hypothetical protein, at 4,692,306 to 4,692,488 Xcc-8004.4935.1 Xcc-8004.4936.1: Xcc-8004.4936.1 - FIG01212169: hypothetical protein, at 4,692,890 to 4,693,171 Xcc-8004.4936.1 Xcc-8004.4937.1: Xcc-8004.4937.1 - FIG01211718: hypothetical protein, at 4,693,202 to 4,693,480 Xcc-8004.4937.1 Position (kb) 4691 4692 4693Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4690.244 kb on + strandat 4690.430 kb on + strand, within Xcc-8004.4933.1at 4690.430 kb on + strand, within Xcc-8004.4933.1at 4690.523 kb on + strand, within Xcc-8004.4933.1at 4690.523 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.593 kb on - strand, within Xcc-8004.4933.1at 4690.593 kb on - strand, within Xcc-8004.4933.1at 4690.593 kb on - strand, within Xcc-8004.4933.1at 4690.649 kb on + strand, within Xcc-8004.4933.1at 4690.778 kb on + strand, within Xcc-8004.4933.1at 4690.778 kb on + strand, within Xcc-8004.4933.1at 4690.787 kb on + strand, within Xcc-8004.4933.1at 4690.787 kb on + strand, within Xcc-8004.4933.1at 4690.787 kb on + strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.826 kb on + strand, within Xcc-8004.4933.1at 4690.826 kb on + strand, within Xcc-8004.4933.1at 4690.826 kb on + strand, within Xcc-8004.4933.1at 4690.827 kb on - strand, within Xcc-8004.4933.1at 4690.827 kb on - strand, within Xcc-8004.4933.1at 4690.851 kb on - strand, within Xcc-8004.4933.1at 4690.851 kb on - strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.928 kb on - strand, within Xcc-8004.4933.1at 4691.098 kb on + strandat 4691.099 kb on - strandat 4691.099 kb on - strandat 4691.121 kb on - strandat 4691.135 kb on - strandat 4691.135 kb on - strandat 4691.173 kb on + strandat 4691.173 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.177 kb on - strandat 4691.177 kb on - strandat 4691.177 kb on - strandat 4691.177 kb on - strandat 4691.209 kb on + strandat 4691.209 kb on + strandat 4691.209 kb on + strandat 4691.209 kb on + strandat 4691.209 kb on + strandat 4691.209 kb on + strandat 4691.210 kb on - strandat 4691.210 kb on - strandat 4691.210 kb on - strandat 4691.371 kb on + strand, within Xcc-8004.4934.1at 4691.371 kb on + strand, within Xcc-8004.4934.1at 4691.371 kb on + strand, within Xcc-8004.4934.1at 4691.425 kb on + strand, within Xcc-8004.4934.1at 4691.425 kb on + strand, within Xcc-8004.4934.1at 4691.425 kb on + strand, within Xcc-8004.4934.1at 4691.426 kb on - strand, within Xcc-8004.4934.1at 4691.426 kb on - strand, within Xcc-8004.4934.1at 4691.426 kb on - strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.528 kb on - strand, within Xcc-8004.4934.1at 4691.528 kb on - strand, within Xcc-8004.4934.1at 4691.573 kb on - strand, within Xcc-8004.4934.1at 4691.573 kb on - strand, within Xcc-8004.4934.1at 4691.671 kb on + strand, within Xcc-8004.4934.1at 4691.671 kb on + strand, within Xcc-8004.4934.1at 4691.672 kb on - strand, within Xcc-8004.4934.1at 4691.783 kb on + strand, within Xcc-8004.4934.1at 4691.784 kb on - strand, within Xcc-8004.4934.1at 4691.833 kb on + strand, within Xcc-8004.4934.1at 4691.970 kb on + strand, within Xcc-8004.4934.1at 4691.970 kb on + strand, within Xcc-8004.4934.1at 4691.971 kb on - strand, within Xcc-8004.4934.1at 4692.044 kb on + strand, within Xcc-8004.4934.1at 4692.044 kb on + strand, within Xcc-8004.4934.1at 4692.044 kb on + strand, within Xcc-8004.4934.1at 4692.044 kb on + strand, within Xcc-8004.4934.1at 4692.045 kb on - strand, within Xcc-8004.4934.1at 4692.045 kb on - strand, within Xcc-8004.4934.1at 4692.045 kb on - strand, within Xcc-8004.4934.1at 4692.174 kb on + strandat 4692.174 kb on + strandat 4692.174 kb on + strandat 4692.175 kb on - strandat 4692.175 kb on - strandat 4692.291 kb on - strandat 4692.307 kb on + strandat 4692.307 kb on + strandat 4692.307 kb on + strandat 4692.308 kb on - strandat 4692.308 kb on - strandat 4692.308 kb on - strandat 4692.322 kb on + strandat 4692.323 kb on - strandat 4692.323 kb on - strandat 4692.323 kb on - strandat 4692.381 kb on + strand, within Xcc-8004.4935.1at 4692.381 kb on + strand, within Xcc-8004.4935.1at 4692.381 kb on + strand, within Xcc-8004.4935.1at 4692.381 kb on + strand, within Xcc-8004.4935.1at 4692.382 kb on - strand, within Xcc-8004.4935.1at 4692.507 kb on + strandat 4692.651 kb on - strandat 4692.775 kb on + strandat 4692.775 kb on + strandat 4692.776 kb on - strandat 4692.779 kb on + strandat 4692.779 kb on + strandat 4692.838 kb on + strandat 4692.838 kb on + strandat 4692.838 kb on + strandat 4692.839 kb on - strandat 4692.839 kb on - strandat 4692.839 kb on - strandat 4692.839 kb on - strandat 4692.848 kb on + strandat 4692.849 kb on - strandat 4692.849 kb on - strandat 4692.849 kb on - strandat 4692.849 kb on - strandat 4692.849 kb on - strandat 4692.871 kb on - strandat 4692.918 kb on + strandat 4692.918 kb on + strandat 4692.918 kb on + strandat 4692.918 kb on + strandat 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4692.919 kb on - strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.022 kb on + strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.023 kb on - strand, within Xcc-8004.4936.1at 4693.118 kb on + strand, within Xcc-8004.4936.1at 4693.118 kb on + strand, within Xcc-8004.4936.1at 4693.118 kb on + strand, within Xcc-8004.4936.1at 4693.119 kb on - strand, within Xcc-8004.4936.1at 4693.195 kb on + strandat 4693.195 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,690,244 + -1.0
4,690,430 + Xcc-8004.4933.1 0.21 +0.6
4,690,430 + Xcc-8004.4933.1 0.21 -0.1
4,690,523 + Xcc-8004.4933.1 0.32 -1.3
4,690,523 + Xcc-8004.4933.1 0.32 +2.2
4,690,592 + Xcc-8004.4933.1 0.40 +0.2
4,690,592 + Xcc-8004.4933.1 0.40 +0.1
4,690,592 + Xcc-8004.4933.1 0.40 +0.1
4,690,592 + Xcc-8004.4933.1 0.40 +0.9
4,690,592 + Xcc-8004.4933.1 0.40 +0.3
4,690,592 + Xcc-8004.4933.1 0.40 +0.3
4,690,592 + Xcc-8004.4933.1 0.40 -1.5
4,690,592 + Xcc-8004.4933.1 0.40 +0.5
4,690,593 - Xcc-8004.4933.1 0.40 +0.8
4,690,593 - Xcc-8004.4933.1 0.40 -0.9
4,690,593 - Xcc-8004.4933.1 0.40 +0.0
4,690,649 + Xcc-8004.4933.1 0.47 -0.3
4,690,778 + Xcc-8004.4933.1 0.61 +0.1
4,690,778 + Xcc-8004.4933.1 0.61 +0.6
4,690,787 + Xcc-8004.4933.1 0.63 -1.4
4,690,787 + Xcc-8004.4933.1 0.63 -0.4
4,690,787 + Xcc-8004.4933.1 0.63 -1.1
4,690,788 - Xcc-8004.4933.1 0.63 -0.3
4,690,788 - Xcc-8004.4933.1 0.63 +0.7
4,690,788 - Xcc-8004.4933.1 0.63 -1.3
4,690,788 - Xcc-8004.4933.1 0.63 +0.1
4,690,788 - Xcc-8004.4933.1 0.63 -1.3
4,690,826 + Xcc-8004.4933.1 0.67 -1.6
4,690,826 + Xcc-8004.4933.1 0.67 -1.3
4,690,826 + Xcc-8004.4933.1 0.67 -1.1
4,690,827 - Xcc-8004.4933.1 0.67 +1.9
4,690,827 - Xcc-8004.4933.1 0.67 -0.3
4,690,851 - Xcc-8004.4933.1 0.70 +0.5
4,690,851 - Xcc-8004.4933.1 0.70 -0.1
4,690,910 + Xcc-8004.4933.1 0.77 -0.6
4,690,910 + Xcc-8004.4933.1 0.77 -0.5
4,690,910 + Xcc-8004.4933.1 0.77 -0.3
4,690,910 + Xcc-8004.4933.1 0.77 +0.9
4,690,928 - Xcc-8004.4933.1 0.79 +0.8
4,691,098 + -0.4
4,691,099 - -0.3
4,691,099 - -0.6
4,691,121 - -0.2
4,691,135 - -1.3
4,691,135 - -0.3
4,691,173 + +0.4
4,691,173 + -0.5
4,691,176 + +0.8
4,691,176 + -0.6
4,691,176 + +1.4
4,691,176 + +0.6
4,691,176 + +0.1
4,691,176 + -0.8
4,691,176 + +0.3
4,691,176 + -0.3
4,691,177 - -0.1
4,691,177 - +1.0
4,691,177 - +0.1
4,691,177 - -0.9
4,691,209 + -0.6
4,691,209 + +0.9
4,691,209 + +0.8
4,691,209 + +0.1
4,691,209 + -0.5
4,691,209 + +0.3
4,691,210 - +0.7
4,691,210 - -0.2
4,691,210 - +0.7
4,691,371 + Xcc-8004.4934.1 0.23 +0.1
4,691,371 + Xcc-8004.4934.1 0.23 +0.9
4,691,371 + Xcc-8004.4934.1 0.23 -1.2
4,691,425 + Xcc-8004.4934.1 0.28 -0.2
4,691,425 + Xcc-8004.4934.1 0.28 -0.2
4,691,425 + Xcc-8004.4934.1 0.28 -0.9
4,691,426 - Xcc-8004.4934.1 0.28 +0.4
4,691,426 - Xcc-8004.4934.1 0.28 -0.5
4,691,426 - Xcc-8004.4934.1 0.28 -0.1
4,691,527 + Xcc-8004.4934.1 0.37 -0.5
4,691,527 + Xcc-8004.4934.1 0.37 +0.7
4,691,527 + Xcc-8004.4934.1 0.37 -1.0
4,691,527 + Xcc-8004.4934.1 0.37 +0.1
4,691,527 + Xcc-8004.4934.1 0.37 -0.1
4,691,527 + Xcc-8004.4934.1 0.37 -0.1
4,691,528 - Xcc-8004.4934.1 0.37 +4.1
4,691,528 - Xcc-8004.4934.1 0.37 -1.2
4,691,573 - Xcc-8004.4934.1 0.41 +1.1
4,691,573 - Xcc-8004.4934.1 0.41 +1.6
4,691,671 + Xcc-8004.4934.1 0.50 -1.3
4,691,671 + Xcc-8004.4934.1 0.50 -1.2
4,691,672 - Xcc-8004.4934.1 0.50 +1.0
4,691,783 + Xcc-8004.4934.1 0.60 +0.2
4,691,784 - Xcc-8004.4934.1 0.60 -1.0
4,691,833 + Xcc-8004.4934.1 0.65 -0.9
4,691,970 + Xcc-8004.4934.1 0.77 +0.8
4,691,970 + Xcc-8004.4934.1 0.77 -1.0
4,691,971 - Xcc-8004.4934.1 0.77 -0.4
4,692,044 + Xcc-8004.4934.1 0.84 -0.3
4,692,044 + Xcc-8004.4934.1 0.84 -1.1
4,692,044 + Xcc-8004.4934.1 0.84 -0.3
4,692,044 + Xcc-8004.4934.1 0.84 -0.9
4,692,045 - Xcc-8004.4934.1 0.84 -0.5
4,692,045 - Xcc-8004.4934.1 0.84 +0.3
4,692,045 - Xcc-8004.4934.1 0.84 -1.0
4,692,174 + +1.3
4,692,174 + -0.8
4,692,174 + -0.7
4,692,175 - -0.6
4,692,175 - +0.1
4,692,291 - +0.9
4,692,307 + -0.2
4,692,307 + +0.3
4,692,307 + +1.0
4,692,308 - +0.1
4,692,308 - +0.6
4,692,308 - +0.5
4,692,322 + +0.3
4,692,323 - +2.1
4,692,323 - -1.0
4,692,323 - +0.4
4,692,381 + Xcc-8004.4935.1 0.41 +0.8
4,692,381 + Xcc-8004.4935.1 0.41 -1.1
4,692,381 + Xcc-8004.4935.1 0.41 -0.3
4,692,381 + Xcc-8004.4935.1 0.41 +0.3
4,692,382 - Xcc-8004.4935.1 0.42 +0.1
4,692,507 + +0.1
4,692,651 - +1.0
4,692,775 + +0.6
4,692,775 + -0.9
4,692,776 - -0.5
4,692,779 + +0.8
4,692,779 + +0.6
4,692,838 + +0.4
4,692,838 + +1.6
4,692,838 + -2.2
4,692,839 - +0.1
4,692,839 - -0.4
4,692,839 - +0.5
4,692,839 - -1.7
4,692,848 + +0.1
4,692,849 - -0.4
4,692,849 - +0.7
4,692,849 - +0.2
4,692,849 - -0.9
4,692,849 - +0.1
4,692,871 - -0.6
4,692,918 + +0.7
4,692,918 + +0.1
4,692,918 + +0.1
4,692,918 + -0.3
4,692,919 - Xcc-8004.4936.1 0.10 +0.1
4,692,919 - Xcc-8004.4936.1 0.10 -0.2
4,692,919 - Xcc-8004.4936.1 0.10 -0.1
4,692,919 - Xcc-8004.4936.1 0.10 +0.4
4,692,919 - Xcc-8004.4936.1 0.10 +0.3
4,692,919 - Xcc-8004.4936.1 0.10 -1.0
4,692,919 - Xcc-8004.4936.1 0.10 +0.1
4,692,919 - Xcc-8004.4936.1 0.10 +0.1
4,693,022 + Xcc-8004.4936.1 0.47 -1.1
4,693,022 + Xcc-8004.4936.1 0.47 +0.3
4,693,022 + Xcc-8004.4936.1 0.47 +1.0
4,693,022 + Xcc-8004.4936.1 0.47 -1.1
4,693,022 + Xcc-8004.4936.1 0.47 -0.3
4,693,022 + Xcc-8004.4936.1 0.47 -0.1
4,693,023 - Xcc-8004.4936.1 0.47 -0.4
4,693,023 - Xcc-8004.4936.1 0.47 -1.5
4,693,023 - Xcc-8004.4936.1 0.47 -0.8
4,693,023 - Xcc-8004.4936.1 0.47 +0.2
4,693,023 - Xcc-8004.4936.1 0.47 -0.2
4,693,023 - Xcc-8004.4936.1 0.47 +1.3
4,693,023 - Xcc-8004.4936.1 0.47 -2.0
4,693,023 - Xcc-8004.4936.1 0.47 -0.7
4,693,118 + Xcc-8004.4936.1 0.81 +0.3
4,693,118 + Xcc-8004.4936.1 0.81 +0.2
4,693,118 + Xcc-8004.4936.1 0.81 +0.8
4,693,119 - Xcc-8004.4936.1 0.81 +0.9
4,693,195 + -0.6
4,693,195 + -1.2

Or see this region's nucleotide sequence