Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4911.1 and Xcc-8004.4912.1 are separated by 528 nucleotides Xcc-8004.4912.1 and Xcc-8004.4913.1 are separated by 288 nucleotides Xcc-8004.4913.1 and Xcc-8004.4915.1 are separated by 190 nucleotides
Xcc-8004.4911.1: Xcc-8004.4911.1 - FIG01210100: hypothetical protein, at 4,673,214 to 4,673,996
Xcc-8004.4911.1
Xcc-8004.4912.1: Xcc-8004.4912.1 - FIG01210621: hypothetical protein, at 4,674,525 to 4,675,184
Xcc-8004.4912.1
Xcc-8004.4913.1: Xcc-8004.4913.1 - Nitrogen regulatory protein P-II, at 4,675,473 to 4,675,811
Xcc-8004.4913.1
Xcc-8004.4915.1: Xcc-8004.4915.1 - FIG01211043: hypothetical protein, at 4,676,002 to 4,676,274
Xcc-8004.4915.1
Position (kb) 4674
4675
4676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4673.641 kb on + strand, within Xcc-8004.4911.1 at 4673.642 kb on - strand, within Xcc-8004.4911.1 at 4673.642 kb on - strand, within Xcc-8004.4911.1 at 4673.642 kb on - strand, within Xcc-8004.4911.1 at 4673.672 kb on + strand, within Xcc-8004.4911.1 at 4673.672 kb on + strand, within Xcc-8004.4911.1 at 4673.725 kb on + strand, within Xcc-8004.4911.1 at 4673.725 kb on + strand, within Xcc-8004.4911.1 at 4673.725 kb on + strand, within Xcc-8004.4911.1 at 4673.725 kb on + strand, within Xcc-8004.4911.1 at 4673.725 kb on + strand, within Xcc-8004.4911.1 at 4673.725 kb on + strand, within Xcc-8004.4911.1 at 4673.725 kb on + strand, within Xcc-8004.4911.1 at 4673.726 kb on - strand, within Xcc-8004.4911.1 at 4673.726 kb on - strand, within Xcc-8004.4911.1 at 4673.726 kb on - strand, within Xcc-8004.4911.1 at 4673.726 kb on - strand, within Xcc-8004.4911.1 at 4673.726 kb on - strand, within Xcc-8004.4911.1 at 4673.726 kb on - strand, within Xcc-8004.4911.1 at 4673.726 kb on - strand, within Xcc-8004.4911.1 at 4673.726 kb on - strand, within Xcc-8004.4911.1 at 4673.774 kb on + strand, within Xcc-8004.4911.1 at 4673.810 kb on + strand, within Xcc-8004.4911.1 at 4673.810 kb on + strand, within Xcc-8004.4911.1 at 4673.811 kb on - strand, within Xcc-8004.4911.1 at 4673.811 kb on - strand, within Xcc-8004.4911.1 at 4673.811 kb on - strand, within Xcc-8004.4911.1 at 4673.843 kb on + strand, within Xcc-8004.4911.1 at 4673.843 kb on + strand, within Xcc-8004.4911.1 at 4673.843 kb on + strand, within Xcc-8004.4911.1 at 4673.843 kb on + strand, within Xcc-8004.4911.1 at 4673.843 kb on + strand, within Xcc-8004.4911.1 at 4673.843 kb on + strand, within Xcc-8004.4911.1 at 4673.844 kb on - strand, within Xcc-8004.4911.1 at 4673.844 kb on - strand, within Xcc-8004.4911.1 at 4673.844 kb on - strand, within Xcc-8004.4911.1 at 4673.844 kb on - strand, within Xcc-8004.4911.1 at 4673.844 kb on - strand, within Xcc-8004.4911.1 at 4673.844 kb on - strand, within Xcc-8004.4911.1 at 4673.844 kb on - strand, within Xcc-8004.4911.1 at 4673.903 kb on - strand, within Xcc-8004.4911.1 at 4674.090 kb on + strand at 4674.090 kb on + strand at 4674.090 kb on + strand at 4674.091 kb on - strand at 4674.091 kb on - strand at 4674.091 kb on - strand at 4674.117 kb on + strand at 4674.117 kb on + strand at 4674.117 kb on + strand at 4674.117 kb on + strand at 4674.118 kb on - strand at 4674.118 kb on - strand at 4674.215 kb on + strand at 4674.215 kb on + strand at 4674.216 kb on - strand at 4674.293 kb on + strand at 4674.293 kb on + strand at 4674.293 kb on + strand at 4674.293 kb on + strand at 4674.293 kb on + strand at 4674.293 kb on + strand at 4674.293 kb on + strand at 4674.294 kb on - strand at 4674.294 kb on - strand at 4674.294 kb on - strand at 4674.294 kb on - strand at 4674.322 kb on + strand at 4674.322 kb on + strand at 4674.323 kb on - strand at 4674.323 kb on - strand at 4674.323 kb on - strand at 4674.323 kb on - strand at 4674.323 kb on - strand at 4674.438 kb on + strand at 4674.439 kb on - strand at 4674.439 kb on - strand at 4674.444 kb on + strand at 4674.445 kb on - strand at 4674.531 kb on + strand at 4674.531 kb on + strand at 4674.532 kb on - strand at 4674.532 kb on - strand at 4674.532 kb on - strand at 4674.616 kb on - strand, within Xcc-8004.4912.1 at 4674.616 kb on - strand, within Xcc-8004.4912.1 at 4674.616 kb on - strand, within Xcc-8004.4912.1 at 4674.657 kb on + strand, within Xcc-8004.4912.1 at 4674.658 kb on - strand, within Xcc-8004.4912.1 at 4674.658 kb on - strand, within Xcc-8004.4912.1 at 4674.994 kb on + strand, within Xcc-8004.4912.1 at 4675.155 kb on + strand at 4675.286 kb on + strand at 4675.286 kb on + strand at 4675.286 kb on + strand at 4675.287 kb on - strand at 4675.287 kb on - strand at 4675.300 kb on + strand at 4675.301 kb on - strand at 4675.301 kb on - strand at 4675.301 kb on - strand at 4675.303 kb on + strand at 4675.303 kb on + strand at 4675.303 kb on + strand at 4675.303 kb on + strand at 4675.304 kb on - strand at 4675.304 kb on - strand at 4675.304 kb on - strand at 4675.304 kb on - strand at 4675.304 kb on - strand at 4675.433 kb on + strand at 4675.433 kb on + strand at 4675.433 kb on + strand at 4675.434 kb on - strand at 4675.434 kb on - strand at 4675.434 kb on - strand at 4675.434 kb on - strand at 4675.474 kb on + strand at 4675.474 kb on + strand at 4675.475 kb on - strand at 4675.475 kb on - strand at 4675.475 kb on - strand at 4675.475 kb on - strand at 4675.475 kb on - strand at 4675.531 kb on + strand, within Xcc-8004.4913.1 at 4675.532 kb on - strand, within Xcc-8004.4913.1 at 4675.660 kb on + strand, within Xcc-8004.4913.1 at 4675.660 kb on + strand, within Xcc-8004.4913.1 at 4675.660 kb on + strand, within Xcc-8004.4913.1 at 4675.660 kb on + strand, within Xcc-8004.4913.1 at 4675.660 kb on + strand, within Xcc-8004.4913.1 at 4675.661 kb on - strand, within Xcc-8004.4913.1 at 4675.661 kb on - strand, within Xcc-8004.4913.1 at 4675.661 kb on - strand, within Xcc-8004.4913.1 at 4675.661 kb on - strand, within Xcc-8004.4913.1 at 4675.675 kb on + strand, within Xcc-8004.4913.1 at 4675.676 kb on - strand, within Xcc-8004.4913.1 at 4675.847 kb on + strand at 4675.848 kb on - strand at 4675.917 kb on + strand at 4675.917 kb on + strand at 4675.918 kb on - strand at 4675.918 kb on - strand at 4675.918 kb on - strand at 4675.923 kb on + strand at 4675.923 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.955 kb on + strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.956 kb on - strand at 4675.971 kb on + strand at 4675.972 kb on - strand at 4675.972 kb on - strand at 4675.972 kb on - strand at 4675.980 kb on + strand at 4675.980 kb on + strand at 4675.980 kb on + strand at 4675.980 kb on + strand at 4675.981 kb on - strand at 4675.981 kb on - strand at 4675.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,673,641 + Xcc-8004.4911.1 0.55 -1.1 4,673,642 - Xcc-8004.4911.1 0.55 -0.1 4,673,642 - Xcc-8004.4911.1 0.55 +0.1 4,673,642 - Xcc-8004.4911.1 0.55 -0.7 4,673,672 + Xcc-8004.4911.1 0.58 -1.7 4,673,672 + Xcc-8004.4911.1 0.58 +0.1 4,673,725 + Xcc-8004.4911.1 0.65 -0.3 4,673,725 + Xcc-8004.4911.1 0.65 +0.2 4,673,725 + Xcc-8004.4911.1 0.65 -0.3 4,673,725 + Xcc-8004.4911.1 0.65 -0.1 4,673,725 + Xcc-8004.4911.1 0.65 -1.2 4,673,725 + Xcc-8004.4911.1 0.65 -0.1 4,673,725 + Xcc-8004.4911.1 0.65 +0.5 4,673,726 - Xcc-8004.4911.1 0.65 +0.3 4,673,726 - Xcc-8004.4911.1 0.65 +0.5 4,673,726 - Xcc-8004.4911.1 0.65 +0.1 4,673,726 - Xcc-8004.4911.1 0.65 +1.2 4,673,726 - Xcc-8004.4911.1 0.65 +1.1 4,673,726 - Xcc-8004.4911.1 0.65 -1.2 4,673,726 - Xcc-8004.4911.1 0.65 +2.3 4,673,726 - Xcc-8004.4911.1 0.65 +1.2 4,673,774 + Xcc-8004.4911.1 0.72 -0.0 4,673,810 + Xcc-8004.4911.1 0.76 -0.9 4,673,810 + Xcc-8004.4911.1 0.76 -0.4 4,673,811 - Xcc-8004.4911.1 0.76 +0.1 4,673,811 - Xcc-8004.4911.1 0.76 +1.0 4,673,811 - Xcc-8004.4911.1 0.76 +0.1 4,673,843 + Xcc-8004.4911.1 0.80 +0.6 4,673,843 + Xcc-8004.4911.1 0.80 +1.3 4,673,843 + Xcc-8004.4911.1 0.80 -0.1 4,673,843 + Xcc-8004.4911.1 0.80 -0.1 4,673,843 + Xcc-8004.4911.1 0.80 +0.7 4,673,843 + Xcc-8004.4911.1 0.80 +0.6 4,673,844 - Xcc-8004.4911.1 0.80 +0.4 4,673,844 - Xcc-8004.4911.1 0.80 -1.0 4,673,844 - Xcc-8004.4911.1 0.80 -0.0 4,673,844 - Xcc-8004.4911.1 0.80 -0.2 4,673,844 - Xcc-8004.4911.1 0.80 -1.3 4,673,844 - Xcc-8004.4911.1 0.80 -1.3 4,673,844 - Xcc-8004.4911.1 0.80 -0.4 4,673,903 - Xcc-8004.4911.1 0.88 +0.7 4,674,090 + -0.2 4,674,090 + -0.1 4,674,090 + -0.9 4,674,091 - +2.1 4,674,091 - -0.3 4,674,091 - +1.5 4,674,117 + -0.5 4,674,117 + -0.6 4,674,117 + -1.9 4,674,117 + +0.4 4,674,118 - -0.7 4,674,118 - -0.2 4,674,215 + -0.3 4,674,215 + -0.1 4,674,216 - +0.0 4,674,293 + -0.1 4,674,293 + -1.4 4,674,293 + -1.4 4,674,293 + +0.2 4,674,293 + +0.2 4,674,293 + +0.1 4,674,293 + -1.9 4,674,294 - -0.1 4,674,294 - +0.1 4,674,294 - -0.4 4,674,294 - +0.5 4,674,322 + -0.7 4,674,322 + -0.0 4,674,323 - +0.4 4,674,323 - -1.2 4,674,323 - +0.5 4,674,323 - -0.6 4,674,323 - +0.0 4,674,438 + -0.0 4,674,439 - -0.1 4,674,439 - -1.6 4,674,444 + +0.1 4,674,445 - +1.8 4,674,531 + +0.4 4,674,531 + +0.3 4,674,532 - +0.1 4,674,532 - -0.4 4,674,532 - +1.7 4,674,616 - Xcc-8004.4912.1 0.14 +0.1 4,674,616 - Xcc-8004.4912.1 0.14 -0.1 4,674,616 - Xcc-8004.4912.1 0.14 +0.1 4,674,657 + Xcc-8004.4912.1 0.20 -0.5 4,674,658 - Xcc-8004.4912.1 0.20 -2.1 4,674,658 - Xcc-8004.4912.1 0.20 +0.4 4,674,994 + Xcc-8004.4912.1 0.71 -0.0 4,675,155 + -0.6 4,675,286 + -0.1 4,675,286 + +0.6 4,675,286 + -0.5 4,675,287 - +0.3 4,675,287 - -1.3 4,675,300 + -0.7 4,675,301 - +0.7 4,675,301 - +1.0 4,675,301 - +0.1 4,675,303 + -0.3 4,675,303 + +0.5 4,675,303 + -0.4 4,675,303 + -1.8 4,675,304 - +0.0 4,675,304 - -0.6 4,675,304 - +0.9 4,675,304 - -0.2 4,675,304 - +0.3 4,675,433 + -0.4 4,675,433 + -0.7 4,675,433 + +0.1 4,675,434 - -0.7 4,675,434 - -0.3 4,675,434 - -2.3 4,675,434 - -1.1 4,675,474 + +0.6 4,675,474 + -0.9 4,675,475 - +0.3 4,675,475 - +1.4 4,675,475 - +0.6 4,675,475 - +0.2 4,675,475 - -0.2 4,675,531 + Xcc-8004.4913.1 0.17 +2.2 4,675,532 - Xcc-8004.4913.1 0.17 +0.0 4,675,660 + Xcc-8004.4913.1 0.55 +1.6 4,675,660 + Xcc-8004.4913.1 0.55 -1.3 4,675,660 + Xcc-8004.4913.1 0.55 -0.1 4,675,660 + Xcc-8004.4913.1 0.55 +0.7 4,675,660 + Xcc-8004.4913.1 0.55 -0.0 4,675,661 - Xcc-8004.4913.1 0.55 -0.1 4,675,661 - Xcc-8004.4913.1 0.55 -1.1 4,675,661 - Xcc-8004.4913.1 0.55 -1.3 4,675,661 - Xcc-8004.4913.1 0.55 -2.2 4,675,675 + Xcc-8004.4913.1 0.60 -0.4 4,675,676 - Xcc-8004.4913.1 0.60 -0.3 4,675,847 + -1.0 4,675,848 - -0.6 4,675,917 + -0.5 4,675,917 + -1.1 4,675,918 - +0.3 4,675,918 - +0.6 4,675,918 - +0.7 4,675,923 + +1.1 4,675,923 + +0.9 4,675,955 + +0.8 4,675,955 + -1.3 4,675,955 + +0.9 4,675,955 + +0.2 4,675,955 + -0.2 4,675,955 + +0.6 4,675,955 + -0.1 4,675,955 + -0.7 4,675,955 + -0.6 4,675,955 + +0.4 4,675,955 + -1.7 4,675,955 + +0.2 4,675,955 + -0.7 4,675,955 + +0.5 4,675,956 - -0.1 4,675,956 - -0.2 4,675,956 - -0.5 4,675,956 - +1.1 4,675,956 - +0.3 4,675,956 - -1.5 4,675,956 - +0.3 4,675,971 + +0.6 4,675,972 - +0.5 4,675,972 - +1.2 4,675,972 - +0.2 4,675,980 + +0.6 4,675,980 + -1.1 4,675,980 + -0.2 4,675,980 + -0.6 4,675,981 - +0.5 4,675,981 - -0.1 4,675,981 - -2.5
Or see this region's nucleotide sequence