Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4872.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,629,558	+				+0.1
4,629,615	+		Xcc-8004.4871.1	0.40	-0.4
4,629,616	-		Xcc-8004.4871.1	0.41	+1.0
4,629,715	+				+0.3
4,629,716	-				-1.8
4,631,227	+				+1.4
4,631,291	+				+0.4
4,631,291	+				-1.1
4,631,292	-				+0.1
4,631,292	-				+0.1
4,631,395	+				-1.6
4,631,395	+				-0.2
4,631,395	+				-0.8
4,631,395	+				-0.5
4,631,396	-				-1.1
4,631,396	-				-0.6
4,631,432	+				-0.8
4,631,480	+				+0.9
4,631,497	+				+0.6
4,631,497	+				+0.1
4,631,497	+				+0.5
4,631,497	+				+1.1
4,631,498	-				-1.2
4,631,498	-				-0.0
4,631,498	-				+0.5
4,631,498	-				+0.5
4,631,525	+				+0.0
4,631,525	+				+0.2
4,631,542	-				-0.1
4,631,548	+				+0.7
4,631,556	+				-0.2
4,631,556	+				+0.3
4,631,557	-				+0.6
4,631,572	+				+1.5
4,631,585	+				-0.7
4,631,585	+				+1.5
4,631,586	-				+1.7
4,631,586	-				+0.6
4,631,586	-				+0.1
4,631,586	-				-0.5
4,631,586	-				-0.1
4,631,586	-				-0.1
4,631,605	-				-0.6
4,631,629	+				-0.6
4,631,629	+				+0.2
4,631,629	+				-0.2
4,631,629	+				+1.2
4,631,629	+				-0.4
4,631,630	-				+1.0
4,631,630	-				+0.8
4,631,630	-				-0.5
4,631,630	-				-0.9
4,631,630	-				+1.0
4,631,630	-				+0.7
4,631,630	-				-3.2
4,631,630	-				-0.5
4,631,639	+				+0.1
4,631,665	+				+1.1
4,631,665	+				+0.9
4,631,666	-				-0.9
4,631,698	-				-1.3
4,631,698	-				-0.6
4,631,700	+				+0.4
4,631,701	-				-0.8
4,631,703	+				-0.5
4,631,704	-				-0.6
4,631,704	-				+0.2
4,631,704	-				+0.1
4,631,728	+				-0.1
4,631,728	+				+2.1
4,631,728	+				-0.0
4,631,729	-				-1.6
4,631,729	-				+0.5
4,631,729	-				-1.7
4,631,729	-				-0.5
4,631,729	-				+0.1
4,631,736	+				+0.9
4,631,736	+				+0.5
4,631,736	+				+0.1
4,631,736	+				-0.4
4,631,737	-				+0.5
4,631,737	-				-0.2
4,631,737	-				+1.0
4,631,737	-				-0.4
4,631,737	-				+0.6
4,631,789	+				-0.6
4,631,789	+				-0.1
4,631,789	+				-0.0
4,631,790	-				+0.3
4,631,795	+				+0.1
4,631,795	+				+0.3
4,631,796	-				+0.3
4,631,796	-				+0.4
4,631,821	+				-0.1
4,631,821	+				-1.3
4,631,821	+				-0.1
4,631,821	+				+0.2
4,631,821	+				+0.8
4,631,821	+				-0.5
4,631,821	+				+0.2
4,631,821	+				+1.1
4,631,822	-				+0.9
4,631,822	-				-0.0
4,631,822	-				+0.3
4,631,822	-				+1.3
4,631,822	-				+0.2
4,631,822	-				+0.2
4,631,822	-				-0.1
4,631,822	-				+0.4
4,631,822	-				-0.0
4,631,822	-				+0.9
4,631,822	-				-0.8
4,631,822	-				-0.9
4,631,822	-				+2.6
4,631,822	-				+1.7
4,631,837	+				+0.3
4,631,837	+				-1.3
4,631,837	+				+2.1
4,631,837	+				-0.9
4,631,838	-				-0.3
4,631,838	-				+0.2
4,631,838	-				+1.5
4,631,838	-				+0.5
4,631,838	-				+1.0
4,631,840	+				+0.5
4,631,840	+				+0.1
4,631,840	+				-0.9
4,631,841	-				+0.5
4,631,886	+				+0.1
4,631,887	-				+0.7
4,631,901	+				-0.1
4,631,902	-				-0.6
4,631,911	+				-0.2
4,631,911	+				-1.1
4,631,911	+				+0.4
4,631,912	-				-1.8
4,631,918	+				-0.6
4,631,918	+				-0.0
4,631,918	+				-0.8
4,631,919	-				-1.0
4,631,925	+				+0.3
4,631,925	+				-0.3
4,631,925	+				+1.3
4,631,925	+				-1.0
4,631,925	+				-0.2
4,631,925	+				-0.8
4,631,925	+				-0.2
4,631,925	+				-0.1
4,631,925	+				+0.4
4,631,925	+				+0.0
4,631,925	+				-0.6
4,631,925	+				+0.0
4,631,925	+				+0.3
4,631,926	-				-0.0
4,631,926	-				-0.7
4,631,926	-				-1.3
4,631,926	-				-0.3
4,631,926	-				+0.3
4,631,926	-				-1.1
4,631,926	-				-1.5
4,631,926	-				+0.3
4,631,926	-				+0.4
4,631,926	-				+0.1
4,631,926	-				-1.4
4,631,926	-				+0.2
4,631,926	-				-1.6
4,631,926	-				+0.1
4,631,926	-				-0.6
4,631,926	-				+0.1
4,631,929	+				+0.7
4,631,929	+				+0.3
4,631,929	+				+0.4
4,631,929	+				-0.1
4,631,929	+				-1.2
4,631,929	+				-0.9
4,631,929	+				-0.2
4,631,930	-				-0.7
4,631,930	-				-0.4
4,631,930	-				-0.9
4,631,930	-				-1.1
4,631,930	-				-0.4
4,631,930	-				-0.1
4,631,931	+				-0.7
4,631,931	+				-1.2
4,631,931	+				-0.5
4,631,931	+				+0.1
4,631,931	+				-0.7
4,631,931	+				+0.5
4,631,931	+				+0.2
4,631,931	+				+0.3
4,631,931	+				+0.1
4,631,931	+				+0.5
4,631,932	-				+1.3
4,631,932	-				-0.5
4,631,932	-				+1.1
4,631,932	-				-0.7
4,631,932	-				-0.2
4,631,932	-				-0.2
4,631,932	-				+0.9
4,631,932	-				-0.9
4,631,932	-				+0.6
4,631,932	-				+0.4
4,631,932	-				+0.5
4,631,977	+				-0.8
4,631,978	-				+2.1
4,631,978	-				+0.3
4,631,978	-				+0.7
4,632,009	+				+0.8
4,632,023	+				-0.2
4,632,023	+				-0.7
4,632,023	+				+0.2
4,632,024	-				-1.9
4,632,024	-				+0.2
4,632,024	-				-1.0
4,632,024	-				-0.4
4,632,024	-				+0.5
4,632,031	+				+0.3
4,632,031	+				+0.1
4,632,034	+				-0.6
4,632,035	-				-0.3
4,632,062	-				+1.4
4,632,062	-				+0.6
4,632,068	-				+0.1
4,632,068	-				+1.1
4,632,068	-				-0.5
4,632,081	-				+0.4