Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4870.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4869.1 and Xcc-8004.4870.1 are separated by 226 nucleotidesXcc-8004.4870.1 and Xcc-8004.4871.1 are separated by 84 nucleotidesXcc-8004.4871.1 and Xcc-8004.4872.1 are separated by 55 nucleotides Xcc-8004.4869.1: Xcc-8004.4869.1 - hypothetical protein, at 4,627,262 to 4,628,275 Xcc-8004.4869.1 Xcc-8004.4870.1: Xcc-8004.4870.1 - Mobile element protein, at 4,628,502 to 4,629,482 Xcc-8004.4870.1 Xcc-8004.4871.1: Xcc-8004.4871.1 - Phage tail completion protein, at 4,629,567 to 4,629,686 Xcc-8004.4871.1 Xcc-8004.4872.1: Xcc-8004.4872.1 - Mobile element protein, at 4,629,742 to 4,631,166 Xcc-8004.4872.1 Position (kb) 4628 4629 4630Strain fitness (log2 ratio) -2 -1 0 1 2at 4627.515 kb on + strand, within Xcc-8004.4869.1at 4627.515 kb on + strand, within Xcc-8004.4869.1at 4627.515 kb on + strand, within Xcc-8004.4869.1at 4627.515 kb on + strand, within Xcc-8004.4869.1at 4627.516 kb on - strand, within Xcc-8004.4869.1at 4627.516 kb on - strand, within Xcc-8004.4869.1at 4627.534 kb on + strand, within Xcc-8004.4869.1at 4627.534 kb on + strand, within Xcc-8004.4869.1at 4627.534 kb on + strand, within Xcc-8004.4869.1at 4627.535 kb on - strand, within Xcc-8004.4869.1at 4627.535 kb on - strand, within Xcc-8004.4869.1at 4627.535 kb on - strand, within Xcc-8004.4869.1at 4627.535 kb on - strand, within Xcc-8004.4869.1at 4627.570 kb on + strand, within Xcc-8004.4869.1at 4627.570 kb on + strand, within Xcc-8004.4869.1at 4627.571 kb on - strand, within Xcc-8004.4869.1at 4627.571 kb on - strand, within Xcc-8004.4869.1at 4627.571 kb on - strand, within Xcc-8004.4869.1at 4627.571 kb on - strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.674 kb on - strand, within Xcc-8004.4869.1at 4627.674 kb on - strand, within Xcc-8004.4869.1at 4627.677 kb on + strand, within Xcc-8004.4869.1at 4627.691 kb on + strand, within Xcc-8004.4869.1at 4627.691 kb on + strand, within Xcc-8004.4869.1at 4627.691 kb on + strand, within Xcc-8004.4869.1at 4627.693 kb on + strand, within Xcc-8004.4869.1at 4627.693 kb on + strand, within Xcc-8004.4869.1at 4627.694 kb on - strand, within Xcc-8004.4869.1at 4627.727 kb on - strand, within Xcc-8004.4869.1at 4627.802 kb on - strand, within Xcc-8004.4869.1at 4627.802 kb on - strand, within Xcc-8004.4869.1at 4627.810 kb on - strand, within Xcc-8004.4869.1at 4627.810 kb on - strand, within Xcc-8004.4869.1at 4627.818 kb on + strand, within Xcc-8004.4869.1at 4627.819 kb on - strand, within Xcc-8004.4869.1at 4627.819 kb on - strand, within Xcc-8004.4869.1at 4627.843 kb on + strand, within Xcc-8004.4869.1at 4627.843 kb on + strand, within Xcc-8004.4869.1at 4627.843 kb on + strand, within Xcc-8004.4869.1at 4627.843 kb on + strand, within Xcc-8004.4869.1at 4627.844 kb on - strand, within Xcc-8004.4869.1at 4627.858 kb on + strand, within Xcc-8004.4869.1at 4627.858 kb on + strand, within Xcc-8004.4869.1at 4627.894 kb on + strand, within Xcc-8004.4869.1at 4627.901 kb on + strand, within Xcc-8004.4869.1at 4627.929 kb on + strand, within Xcc-8004.4869.1at 4627.930 kb on - strand, within Xcc-8004.4869.1at 4627.930 kb on - strand, within Xcc-8004.4869.1at 4627.939 kb on + strand, within Xcc-8004.4869.1at 4627.939 kb on + strand, within Xcc-8004.4869.1at 4627.939 kb on + strand, within Xcc-8004.4869.1at 4627.939 kb on + strand, within Xcc-8004.4869.1at 4627.939 kb on + strand, within Xcc-8004.4869.1at 4627.939 kb on + strand, within Xcc-8004.4869.1at 4627.939 kb on + strand, within Xcc-8004.4869.1at 4627.940 kb on - strand, within Xcc-8004.4869.1at 4627.940 kb on - strand, within Xcc-8004.4869.1at 4627.940 kb on - strand, within Xcc-8004.4869.1at 4627.940 kb on - strand, within Xcc-8004.4869.1at 4627.940 kb on - strand, within Xcc-8004.4869.1at 4627.940 kb on - strand, within Xcc-8004.4869.1at 4627.943 kb on + strand, within Xcc-8004.4869.1at 4627.943 kb on + strand, within Xcc-8004.4869.1at 4627.943 kb on + strand, within Xcc-8004.4869.1at 4627.943 kb on + strand, within Xcc-8004.4869.1at 4627.943 kb on + strand, within Xcc-8004.4869.1at 4627.943 kb on + strand, within Xcc-8004.4869.1at 4627.943 kb on + strand, within Xcc-8004.4869.1at 4627.944 kb on - strand, within Xcc-8004.4869.1at 4627.944 kb on - strand, within Xcc-8004.4869.1at 4627.944 kb on - strand, within Xcc-8004.4869.1at 4627.944 kb on - strand, within Xcc-8004.4869.1at 4627.944 kb on - strand, within Xcc-8004.4869.1at 4627.972 kb on + strand, within Xcc-8004.4869.1at 4627.972 kb on + strand, within Xcc-8004.4869.1at 4627.973 kb on - strand, within Xcc-8004.4869.1at 4627.984 kb on + strand, within Xcc-8004.4869.1at 4627.985 kb on - strand, within Xcc-8004.4869.1at 4627.985 kb on - strand, within Xcc-8004.4869.1at 4627.990 kb on + strand, within Xcc-8004.4869.1at 4627.990 kb on + strand, within Xcc-8004.4869.1at 4628.019 kb on + strand, within Xcc-8004.4869.1at 4628.019 kb on + strand, within Xcc-8004.4869.1at 4628.020 kb on - strand, within Xcc-8004.4869.1at 4628.020 kb on - strand, within Xcc-8004.4869.1at 4628.020 kb on - strand, within Xcc-8004.4869.1at 4628.025 kb on + strand, within Xcc-8004.4869.1at 4628.026 kb on - strand, within Xcc-8004.4869.1at 4628.026 kb on - strand, within Xcc-8004.4869.1at 4628.040 kb on - strand, within Xcc-8004.4869.1at 4628.079 kb on + strand, within Xcc-8004.4869.1at 4628.079 kb on + strand, within Xcc-8004.4869.1at 4628.080 kb on - strand, within Xcc-8004.4869.1at 4628.081 kb on + strand, within Xcc-8004.4869.1at 4628.082 kb on - strand, within Xcc-8004.4869.1at 4628.082 kb on - strand, within Xcc-8004.4869.1at 4628.089 kb on + strand, within Xcc-8004.4869.1at 4628.089 kb on + strand, within Xcc-8004.4869.1at 4628.147 kb on + strand, within Xcc-8004.4869.1at 4628.158 kb on + strand, within Xcc-8004.4869.1at 4628.158 kb on + strand, within Xcc-8004.4869.1at 4628.158 kb on + strand, within Xcc-8004.4869.1at 4628.188 kb on + strandat 4628.188 kb on + strandat 4628.191 kb on + strandat 4628.191 kb on + strandat 4628.191 kb on + strandat 4628.192 kb on - strandat 4628.227 kb on + strandat 4628.231 kb on + strandat 4628.231 kb on + strandat 4628.239 kb on - strandat 4628.261 kb on - strandat 4628.261 kb on - strandat 4628.261 kb on - strandat 4628.280 kb on + strandat 4628.281 kb on - strandat 4628.342 kb on + strandat 4628.342 kb on + strandat 4628.343 kb on - strandat 4628.343 kb on - strandat 4628.392 kb on + strandat 4628.410 kb on + strandat 4628.410 kb on + strandat 4628.413 kb on + strandat 4628.414 kb on - strandat 4628.414 kb on - strandat 4628.414 kb on - strandat 4628.414 kb on - strandat 4628.426 kb on + strandat 4629.558 kb on + strandat 4629.615 kb on + strand, within Xcc-8004.4871.1at 4629.616 kb on - strand, within Xcc-8004.4871.1at 4629.715 kb on + strandat 4629.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,627,515 + Xcc-8004.4869.1 0.25 -0.1
4,627,515 + Xcc-8004.4869.1 0.25 -0.6
4,627,515 + Xcc-8004.4869.1 0.25 +1.1
4,627,515 + Xcc-8004.4869.1 0.25 +0.5
4,627,516 - Xcc-8004.4869.1 0.25 -0.6
4,627,516 - Xcc-8004.4869.1 0.25 +1.4
4,627,534 + Xcc-8004.4869.1 0.27 -0.1
4,627,534 + Xcc-8004.4869.1 0.27 +0.3
4,627,534 + Xcc-8004.4869.1 0.27 +0.6
4,627,535 - Xcc-8004.4869.1 0.27 -2.4
4,627,535 - Xcc-8004.4869.1 0.27 -0.1
4,627,535 - Xcc-8004.4869.1 0.27 -1.9
4,627,535 - Xcc-8004.4869.1 0.27 -2.2
4,627,570 + Xcc-8004.4869.1 0.30 -0.2
4,627,570 + Xcc-8004.4869.1 0.30 +0.8
4,627,571 - Xcc-8004.4869.1 0.30 +0.8
4,627,571 - Xcc-8004.4869.1 0.30 -0.1
4,627,571 - Xcc-8004.4869.1 0.30 +0.9
4,627,571 - Xcc-8004.4869.1 0.30 -0.2
4,627,673 + Xcc-8004.4869.1 0.41 +2.1
4,627,673 + Xcc-8004.4869.1 0.41 +0.4
4,627,673 + Xcc-8004.4869.1 0.41 -1.7
4,627,673 + Xcc-8004.4869.1 0.41 +0.4
4,627,673 + Xcc-8004.4869.1 0.41 -1.7
4,627,673 + Xcc-8004.4869.1 0.41 -0.6
4,627,674 - Xcc-8004.4869.1 0.41 -0.2
4,627,674 - Xcc-8004.4869.1 0.41 +0.4
4,627,677 + Xcc-8004.4869.1 0.41 -0.1
4,627,691 + Xcc-8004.4869.1 0.42 -0.0
4,627,691 + Xcc-8004.4869.1 0.42 +1.5
4,627,691 + Xcc-8004.4869.1 0.42 +1.3
4,627,693 + Xcc-8004.4869.1 0.43 +1.3
4,627,693 + Xcc-8004.4869.1 0.43 +0.1
4,627,694 - Xcc-8004.4869.1 0.43 +1.2
4,627,727 - Xcc-8004.4869.1 0.46 +0.7
4,627,802 - Xcc-8004.4869.1 0.53 +0.3
4,627,802 - Xcc-8004.4869.1 0.53 +0.9
4,627,810 - Xcc-8004.4869.1 0.54 -0.1
4,627,810 - Xcc-8004.4869.1 0.54 -0.1
4,627,818 + Xcc-8004.4869.1 0.55 +1.1
4,627,819 - Xcc-8004.4869.1 0.55 +0.5
4,627,819 - Xcc-8004.4869.1 0.55 -0.4
4,627,843 + Xcc-8004.4869.1 0.57 +1.6
4,627,843 + Xcc-8004.4869.1 0.57 -0.6
4,627,843 + Xcc-8004.4869.1 0.57 +1.3
4,627,843 + Xcc-8004.4869.1 0.57 +1.5
4,627,844 - Xcc-8004.4869.1 0.57 +0.2
4,627,858 + Xcc-8004.4869.1 0.59 +0.3
4,627,858 + Xcc-8004.4869.1 0.59 +0.2
4,627,894 + Xcc-8004.4869.1 0.62 -0.2
4,627,901 + Xcc-8004.4869.1 0.63 +0.1
4,627,929 + Xcc-8004.4869.1 0.66 -0.5
4,627,930 - Xcc-8004.4869.1 0.66 +2.2
4,627,930 - Xcc-8004.4869.1 0.66 -0.4
4,627,939 + Xcc-8004.4869.1 0.67 -0.9
4,627,939 + Xcc-8004.4869.1 0.67 -0.7
4,627,939 + Xcc-8004.4869.1 0.67 -0.1
4,627,939 + Xcc-8004.4869.1 0.67 -0.9
4,627,939 + Xcc-8004.4869.1 0.67 +0.4
4,627,939 + Xcc-8004.4869.1 0.67 +0.0
4,627,939 + Xcc-8004.4869.1 0.67 -1.3
4,627,940 - Xcc-8004.4869.1 0.67 +0.5
4,627,940 - Xcc-8004.4869.1 0.67 -0.7
4,627,940 - Xcc-8004.4869.1 0.67 +0.3
4,627,940 - Xcc-8004.4869.1 0.67 +0.2
4,627,940 - Xcc-8004.4869.1 0.67 -1.0
4,627,940 - Xcc-8004.4869.1 0.67 -0.3
4,627,943 + Xcc-8004.4869.1 0.67 -1.1
4,627,943 + Xcc-8004.4869.1 0.67 +1.2
4,627,943 + Xcc-8004.4869.1 0.67 -1.3
4,627,943 + Xcc-8004.4869.1 0.67 +0.2
4,627,943 + Xcc-8004.4869.1 0.67 -0.3
4,627,943 + Xcc-8004.4869.1 0.67 -0.6
4,627,943 + Xcc-8004.4869.1 0.67 +0.0
4,627,944 - Xcc-8004.4869.1 0.67 -0.3
4,627,944 - Xcc-8004.4869.1 0.67 +0.1
4,627,944 - Xcc-8004.4869.1 0.67 +0.4
4,627,944 - Xcc-8004.4869.1 0.67 -0.6
4,627,944 - Xcc-8004.4869.1 0.67 +1.4
4,627,972 + Xcc-8004.4869.1 0.70 -0.4
4,627,972 + Xcc-8004.4869.1 0.70 -1.2
4,627,973 - Xcc-8004.4869.1 0.70 +1.1
4,627,984 + Xcc-8004.4869.1 0.71 +0.3
4,627,985 - Xcc-8004.4869.1 0.71 +0.3
4,627,985 - Xcc-8004.4869.1 0.71 +0.1
4,627,990 + Xcc-8004.4869.1 0.72 -1.0
4,627,990 + Xcc-8004.4869.1 0.72 +0.9
4,628,019 + Xcc-8004.4869.1 0.75 +1.4
4,628,019 + Xcc-8004.4869.1 0.75 +0.5
4,628,020 - Xcc-8004.4869.1 0.75 +0.1
4,628,020 - Xcc-8004.4869.1 0.75 -0.0
4,628,020 - Xcc-8004.4869.1 0.75 -0.1
4,628,025 + Xcc-8004.4869.1 0.75 +1.3
4,628,026 - Xcc-8004.4869.1 0.75 +1.1
4,628,026 - Xcc-8004.4869.1 0.75 +1.1
4,628,040 - Xcc-8004.4869.1 0.77 +0.9
4,628,079 + Xcc-8004.4869.1 0.81 +0.3
4,628,079 + Xcc-8004.4869.1 0.81 +0.1
4,628,080 - Xcc-8004.4869.1 0.81 -1.1
4,628,081 + Xcc-8004.4869.1 0.81 +0.5
4,628,082 - Xcc-8004.4869.1 0.81 -0.3
4,628,082 - Xcc-8004.4869.1 0.81 +0.0
4,628,089 + Xcc-8004.4869.1 0.82 +0.7
4,628,089 + Xcc-8004.4869.1 0.82 -1.6
4,628,147 + Xcc-8004.4869.1 0.87 +1.1
4,628,158 + Xcc-8004.4869.1 0.88 +0.6
4,628,158 + Xcc-8004.4869.1 0.88 +1.1
4,628,158 + Xcc-8004.4869.1 0.88 +0.9
4,628,188 + -0.9
4,628,188 + -0.8
4,628,191 + -1.2
4,628,191 + -0.1
4,628,191 + +1.7
4,628,192 - -0.1
4,628,227 + -1.8
4,628,231 + +0.3
4,628,231 + -0.1
4,628,239 - -0.5
4,628,261 - -0.6
4,628,261 - -0.1
4,628,261 - +0.6
4,628,280 + -1.5
4,628,281 - +0.8
4,628,342 + +0.1
4,628,342 + +1.3
4,628,343 - -0.9
4,628,343 - +1.3
4,628,392 + -0.3
4,628,410 + -0.5
4,628,410 + -0.4
4,628,413 + +0.1
4,628,414 - +0.4
4,628,414 - +1.4
4,628,414 - +0.3
4,628,414 - +0.4
4,628,426 + -1.2
4,629,558 + +0.1
4,629,615 + Xcc-8004.4871.1 0.40 -0.4
4,629,616 - Xcc-8004.4871.1 0.41 +1.0
4,629,715 + +0.3
4,629,716 - -1.8

Or see this region's nucleotide sequence