Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4867.1 and Xcc-8004.4868.1 are separated by 17 nucleotides Xcc-8004.4868.1 and Xcc-8004.4869.1 are separated by 333 nucleotides Xcc-8004.4869.1 and Xcc-8004.4870.1 are separated by 226 nucleotides
Xcc-8004.4867.1: Xcc-8004.4867.1 - Mobile element protein, at 4,625,784 to 4,626,638
Xcc-8004.4867.1
Xcc-8004.4868.1: Xcc-8004.4868.1 - Mobile element protein, at 4,626,656 to 4,626,928
Xcc-8004.4868.1
Xcc-8004.4869.1: Xcc-8004.4869.1 - hypothetical protein, at 4,627,262 to 4,628,275
Xcc-8004.4869.1
Xcc-8004.4870.1: Xcc-8004.4870.1 - Mobile element protein, at 4,628,502 to 4,629,482
Xcc-8004.4870.1
Position (kb) 4627
4628
4629 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4626.971 kb on + strand at 4626.971 kb on + strand at 4626.987 kb on + strand at 4627.015 kb on - strand at 4627.028 kb on + strand at 4627.028 kb on + strand at 4627.029 kb on - strand at 4627.041 kb on - strand at 4627.073 kb on - strand at 4627.086 kb on + strand at 4627.086 kb on + strand at 4627.086 kb on + strand at 4627.086 kb on + strand at 4627.086 kb on + strand at 4627.087 kb on - strand at 4627.087 kb on - strand at 4627.087 kb on - strand at 4627.091 kb on - strand at 4627.103 kb on + strand at 4627.103 kb on + strand at 4627.103 kb on + strand at 4627.103 kb on + strand at 4627.104 kb on - strand at 4627.104 kb on - strand at 4627.110 kb on + strand at 4627.111 kb on - strand at 4627.172 kb on + strand at 4627.172 kb on + strand at 4627.172 kb on + strand at 4627.173 kb on - strand at 4627.173 kb on - strand at 4627.173 kb on - strand at 4627.173 kb on - strand at 4627.175 kb on + strand at 4627.175 kb on + strand at 4627.175 kb on + strand at 4627.179 kb on - strand at 4627.192 kb on + strand at 4627.193 kb on - strand at 4627.223 kb on - strand at 4627.229 kb on + strand at 4627.231 kb on + strand at 4627.232 kb on - strand at 4627.244 kb on + strand at 4627.259 kb on + strand at 4627.259 kb on + strand at 4627.260 kb on - strand at 4627.262 kb on - strand at 4627.357 kb on + strand at 4627.357 kb on + strand at 4627.384 kb on + strand, within Xcc-8004.4869.1 at 4627.409 kb on + strand, within Xcc-8004.4869.1 at 4627.409 kb on + strand, within Xcc-8004.4869.1 at 4627.410 kb on - strand, within Xcc-8004.4869.1 at 4627.410 kb on - strand, within Xcc-8004.4869.1 at 4627.410 kb on - strand, within Xcc-8004.4869.1 at 4627.410 kb on - strand, within Xcc-8004.4869.1 at 4627.410 kb on - strand, within Xcc-8004.4869.1 at 4627.416 kb on + strand, within Xcc-8004.4869.1 at 4627.417 kb on - strand, within Xcc-8004.4869.1 at 4627.474 kb on + strand, within Xcc-8004.4869.1 at 4627.474 kb on + strand, within Xcc-8004.4869.1 at 4627.475 kb on - strand, within Xcc-8004.4869.1 at 4627.475 kb on - strand, within Xcc-8004.4869.1 at 4627.475 kb on - strand, within Xcc-8004.4869.1 at 4627.475 kb on - strand, within Xcc-8004.4869.1 at 4627.515 kb on + strand, within Xcc-8004.4869.1 at 4627.515 kb on + strand, within Xcc-8004.4869.1 at 4627.515 kb on + strand, within Xcc-8004.4869.1 at 4627.515 kb on + strand, within Xcc-8004.4869.1 at 4627.516 kb on - strand, within Xcc-8004.4869.1 at 4627.516 kb on - strand, within Xcc-8004.4869.1 at 4627.534 kb on + strand, within Xcc-8004.4869.1 at 4627.534 kb on + strand, within Xcc-8004.4869.1 at 4627.534 kb on + strand, within Xcc-8004.4869.1 at 4627.535 kb on - strand, within Xcc-8004.4869.1 at 4627.535 kb on - strand, within Xcc-8004.4869.1 at 4627.535 kb on - strand, within Xcc-8004.4869.1 at 4627.535 kb on - strand, within Xcc-8004.4869.1 at 4627.570 kb on + strand, within Xcc-8004.4869.1 at 4627.570 kb on + strand, within Xcc-8004.4869.1 at 4627.571 kb on - strand, within Xcc-8004.4869.1 at 4627.571 kb on - strand, within Xcc-8004.4869.1 at 4627.571 kb on - strand, within Xcc-8004.4869.1 at 4627.571 kb on - strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.674 kb on - strand, within Xcc-8004.4869.1 at 4627.674 kb on - strand, within Xcc-8004.4869.1 at 4627.677 kb on + strand, within Xcc-8004.4869.1 at 4627.691 kb on + strand, within Xcc-8004.4869.1 at 4627.691 kb on + strand, within Xcc-8004.4869.1 at 4627.691 kb on + strand, within Xcc-8004.4869.1 at 4627.693 kb on + strand, within Xcc-8004.4869.1 at 4627.693 kb on + strand, within Xcc-8004.4869.1 at 4627.694 kb on - strand, within Xcc-8004.4869.1 at 4627.727 kb on - strand, within Xcc-8004.4869.1 at 4627.802 kb on - strand, within Xcc-8004.4869.1 at 4627.802 kb on - strand, within Xcc-8004.4869.1 at 4627.810 kb on - strand, within Xcc-8004.4869.1 at 4627.810 kb on - strand, within Xcc-8004.4869.1 at 4627.818 kb on + strand, within Xcc-8004.4869.1 at 4627.819 kb on - strand, within Xcc-8004.4869.1 at 4627.819 kb on - strand, within Xcc-8004.4869.1 at 4627.843 kb on + strand, within Xcc-8004.4869.1 at 4627.843 kb on + strand, within Xcc-8004.4869.1 at 4627.843 kb on + strand, within Xcc-8004.4869.1 at 4627.843 kb on + strand, within Xcc-8004.4869.1 at 4627.844 kb on - strand, within Xcc-8004.4869.1 at 4627.858 kb on + strand, within Xcc-8004.4869.1 at 4627.858 kb on + strand, within Xcc-8004.4869.1 at 4627.894 kb on + strand, within Xcc-8004.4869.1 at 4627.901 kb on + strand, within Xcc-8004.4869.1 at 4627.929 kb on + strand, within Xcc-8004.4869.1 at 4627.930 kb on - strand, within Xcc-8004.4869.1 at 4627.930 kb on - strand, within Xcc-8004.4869.1 at 4627.939 kb on + strand, within Xcc-8004.4869.1 at 4627.939 kb on + strand, within Xcc-8004.4869.1 at 4627.939 kb on + strand, within Xcc-8004.4869.1 at 4627.939 kb on + strand, within Xcc-8004.4869.1 at 4627.939 kb on + strand, within Xcc-8004.4869.1 at 4627.939 kb on + strand, within Xcc-8004.4869.1 at 4627.939 kb on + strand, within Xcc-8004.4869.1 at 4627.940 kb on - strand, within Xcc-8004.4869.1 at 4627.940 kb on - strand, within Xcc-8004.4869.1 at 4627.940 kb on - strand, within Xcc-8004.4869.1 at 4627.940 kb on - strand, within Xcc-8004.4869.1 at 4627.940 kb on - strand, within Xcc-8004.4869.1 at 4627.940 kb on - strand, within Xcc-8004.4869.1 at 4627.943 kb on + strand, within Xcc-8004.4869.1 at 4627.943 kb on + strand, within Xcc-8004.4869.1 at 4627.943 kb on + strand, within Xcc-8004.4869.1 at 4627.943 kb on + strand, within Xcc-8004.4869.1 at 4627.943 kb on + strand, within Xcc-8004.4869.1 at 4627.943 kb on + strand, within Xcc-8004.4869.1 at 4627.943 kb on + strand, within Xcc-8004.4869.1 at 4627.944 kb on - strand, within Xcc-8004.4869.1 at 4627.944 kb on - strand, within Xcc-8004.4869.1 at 4627.944 kb on - strand, within Xcc-8004.4869.1 at 4627.944 kb on - strand, within Xcc-8004.4869.1 at 4627.944 kb on - strand, within Xcc-8004.4869.1 at 4627.972 kb on + strand, within Xcc-8004.4869.1 at 4627.972 kb on + strand, within Xcc-8004.4869.1 at 4627.973 kb on - strand, within Xcc-8004.4869.1 at 4627.984 kb on + strand, within Xcc-8004.4869.1 at 4627.985 kb on - strand, within Xcc-8004.4869.1 at 4627.985 kb on - strand, within Xcc-8004.4869.1 at 4627.990 kb on + strand, within Xcc-8004.4869.1 at 4627.990 kb on + strand, within Xcc-8004.4869.1 at 4628.019 kb on + strand, within Xcc-8004.4869.1 at 4628.019 kb on + strand, within Xcc-8004.4869.1 at 4628.020 kb on - strand, within Xcc-8004.4869.1 at 4628.020 kb on - strand, within Xcc-8004.4869.1 at 4628.020 kb on - strand, within Xcc-8004.4869.1 at 4628.025 kb on + strand, within Xcc-8004.4869.1 at 4628.026 kb on - strand, within Xcc-8004.4869.1 at 4628.026 kb on - strand, within Xcc-8004.4869.1 at 4628.040 kb on - strand, within Xcc-8004.4869.1 at 4628.079 kb on + strand, within Xcc-8004.4869.1 at 4628.079 kb on + strand, within Xcc-8004.4869.1 at 4628.080 kb on - strand, within Xcc-8004.4869.1 at 4628.081 kb on + strand, within Xcc-8004.4869.1 at 4628.082 kb on - strand, within Xcc-8004.4869.1 at 4628.082 kb on - strand, within Xcc-8004.4869.1 at 4628.089 kb on + strand, within Xcc-8004.4869.1 at 4628.089 kb on + strand, within Xcc-8004.4869.1 at 4628.147 kb on + strand, within Xcc-8004.4869.1 at 4628.158 kb on + strand, within Xcc-8004.4869.1 at 4628.158 kb on + strand, within Xcc-8004.4869.1 at 4628.158 kb on + strand, within Xcc-8004.4869.1 at 4628.188 kb on + strand at 4628.188 kb on + strand at 4628.191 kb on + strand at 4628.191 kb on + strand at 4628.191 kb on + strand at 4628.192 kb on - strand at 4628.227 kb on + strand at 4628.231 kb on + strand at 4628.231 kb on + strand at 4628.239 kb on - strand at 4628.261 kb on - strand at 4628.261 kb on - strand at 4628.261 kb on - strand at 4628.280 kb on + strand at 4628.281 kb on - strand at 4628.342 kb on + strand at 4628.342 kb on + strand at 4628.343 kb on - strand at 4628.343 kb on - strand at 4628.392 kb on + strand at 4628.410 kb on + strand at 4628.410 kb on + strand at 4628.413 kb on + strand at 4628.414 kb on - strand at 4628.414 kb on - strand at 4628.414 kb on - strand at 4628.414 kb on - strand at 4628.426 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,626,971 + -0.5 4,626,971 + -1.2 4,626,987 + +0.4 4,627,015 - +1.1 4,627,028 + -0.3 4,627,028 + +0.4 4,627,029 - -0.7 4,627,041 - -0.2 4,627,073 - -0.1 4,627,086 + +1.6 4,627,086 + -0.5 4,627,086 + -0.1 4,627,086 + -1.0 4,627,086 + -1.9 4,627,087 - -0.2 4,627,087 - +0.2 4,627,087 - +0.6 4,627,091 - -0.0 4,627,103 + -0.3 4,627,103 + +0.6 4,627,103 + +0.3 4,627,103 + -0.7 4,627,104 - +0.1 4,627,104 - -1.2 4,627,110 + -0.1 4,627,111 - +0.8 4,627,172 + +0.7 4,627,172 + +0.5 4,627,172 + +0.9 4,627,173 - +0.4 4,627,173 - +0.3 4,627,173 - +1.7 4,627,173 - +0.0 4,627,175 + +0.3 4,627,175 + -2.6 4,627,175 + -0.4 4,627,179 - -1.3 4,627,192 + +0.1 4,627,193 - +0.2 4,627,223 - +0.3 4,627,229 + +0.4 4,627,231 + +2.1 4,627,232 - +0.6 4,627,244 + -0.2 4,627,259 + +0.1 4,627,259 + -1.8 4,627,260 - -0.4 4,627,262 - -0.5 4,627,357 + -1.4 4,627,357 + -1.7 4,627,384 + Xcc-8004.4869.1 0.12 +0.7 4,627,409 + Xcc-8004.4869.1 0.14 -0.1 4,627,409 + Xcc-8004.4869.1 0.14 -0.6 4,627,410 - Xcc-8004.4869.1 0.15 +0.5 4,627,410 - Xcc-8004.4869.1 0.15 +1.0 4,627,410 - Xcc-8004.4869.1 0.15 -0.3 4,627,410 - Xcc-8004.4869.1 0.15 +0.2 4,627,410 - Xcc-8004.4869.1 0.15 +2.6 4,627,416 + Xcc-8004.4869.1 0.15 +0.5 4,627,417 - Xcc-8004.4869.1 0.15 -1.0 4,627,474 + Xcc-8004.4869.1 0.21 +1.1 4,627,474 + Xcc-8004.4869.1 0.21 -0.5 4,627,475 - Xcc-8004.4869.1 0.21 -0.4 4,627,475 - Xcc-8004.4869.1 0.21 -0.7 4,627,475 - Xcc-8004.4869.1 0.21 -0.0 4,627,475 - Xcc-8004.4869.1 0.21 -0.2 4,627,515 + Xcc-8004.4869.1 0.25 -0.1 4,627,515 + Xcc-8004.4869.1 0.25 -0.6 4,627,515 + Xcc-8004.4869.1 0.25 +1.1 4,627,515 + Xcc-8004.4869.1 0.25 +0.5 4,627,516 - Xcc-8004.4869.1 0.25 -0.6 4,627,516 - Xcc-8004.4869.1 0.25 +1.4 4,627,534 + Xcc-8004.4869.1 0.27 -0.1 4,627,534 + Xcc-8004.4869.1 0.27 +0.3 4,627,534 + Xcc-8004.4869.1 0.27 +0.6 4,627,535 - Xcc-8004.4869.1 0.27 -2.4 4,627,535 - Xcc-8004.4869.1 0.27 -0.1 4,627,535 - Xcc-8004.4869.1 0.27 -1.9 4,627,535 - Xcc-8004.4869.1 0.27 -2.2 4,627,570 + Xcc-8004.4869.1 0.30 -0.2 4,627,570 + Xcc-8004.4869.1 0.30 +0.8 4,627,571 - Xcc-8004.4869.1 0.30 +0.8 4,627,571 - Xcc-8004.4869.1 0.30 -0.1 4,627,571 - Xcc-8004.4869.1 0.30 +0.9 4,627,571 - Xcc-8004.4869.1 0.30 -0.2 4,627,673 + Xcc-8004.4869.1 0.41 +2.1 4,627,673 + Xcc-8004.4869.1 0.41 +0.4 4,627,673 + Xcc-8004.4869.1 0.41 -1.7 4,627,673 + Xcc-8004.4869.1 0.41 +0.4 4,627,673 + Xcc-8004.4869.1 0.41 -1.7 4,627,673 + Xcc-8004.4869.1 0.41 -0.6 4,627,674 - Xcc-8004.4869.1 0.41 -0.2 4,627,674 - Xcc-8004.4869.1 0.41 +0.4 4,627,677 + Xcc-8004.4869.1 0.41 -0.1 4,627,691 + Xcc-8004.4869.1 0.42 -0.0 4,627,691 + Xcc-8004.4869.1 0.42 +1.5 4,627,691 + Xcc-8004.4869.1 0.42 +1.3 4,627,693 + Xcc-8004.4869.1 0.43 +1.3 4,627,693 + Xcc-8004.4869.1 0.43 +0.1 4,627,694 - Xcc-8004.4869.1 0.43 +1.2 4,627,727 - Xcc-8004.4869.1 0.46 +0.7 4,627,802 - Xcc-8004.4869.1 0.53 +0.3 4,627,802 - Xcc-8004.4869.1 0.53 +0.9 4,627,810 - Xcc-8004.4869.1 0.54 -0.1 4,627,810 - Xcc-8004.4869.1 0.54 -0.1 4,627,818 + Xcc-8004.4869.1 0.55 +1.1 4,627,819 - Xcc-8004.4869.1 0.55 +0.5 4,627,819 - Xcc-8004.4869.1 0.55 -0.4 4,627,843 + Xcc-8004.4869.1 0.57 +1.6 4,627,843 + Xcc-8004.4869.1 0.57 -0.6 4,627,843 + Xcc-8004.4869.1 0.57 +1.3 4,627,843 + Xcc-8004.4869.1 0.57 +1.5 4,627,844 - Xcc-8004.4869.1 0.57 +0.2 4,627,858 + Xcc-8004.4869.1 0.59 +0.3 4,627,858 + Xcc-8004.4869.1 0.59 +0.2 4,627,894 + Xcc-8004.4869.1 0.62 -0.2 4,627,901 + Xcc-8004.4869.1 0.63 +0.1 4,627,929 + Xcc-8004.4869.1 0.66 -0.5 4,627,930 - Xcc-8004.4869.1 0.66 +2.2 4,627,930 - Xcc-8004.4869.1 0.66 -0.4 4,627,939 + Xcc-8004.4869.1 0.67 -0.9 4,627,939 + Xcc-8004.4869.1 0.67 -0.7 4,627,939 + Xcc-8004.4869.1 0.67 -0.1 4,627,939 + Xcc-8004.4869.1 0.67 -0.9 4,627,939 + Xcc-8004.4869.1 0.67 +0.4 4,627,939 + Xcc-8004.4869.1 0.67 +0.0 4,627,939 + Xcc-8004.4869.1 0.67 -1.3 4,627,940 - Xcc-8004.4869.1 0.67 +0.5 4,627,940 - Xcc-8004.4869.1 0.67 -0.7 4,627,940 - Xcc-8004.4869.1 0.67 +0.3 4,627,940 - Xcc-8004.4869.1 0.67 +0.2 4,627,940 - Xcc-8004.4869.1 0.67 -1.0 4,627,940 - Xcc-8004.4869.1 0.67 -0.3 4,627,943 + Xcc-8004.4869.1 0.67 -1.1 4,627,943 + Xcc-8004.4869.1 0.67 +1.2 4,627,943 + Xcc-8004.4869.1 0.67 -1.3 4,627,943 + Xcc-8004.4869.1 0.67 +0.2 4,627,943 + Xcc-8004.4869.1 0.67 -0.3 4,627,943 + Xcc-8004.4869.1 0.67 -0.6 4,627,943 + Xcc-8004.4869.1 0.67 +0.0 4,627,944 - Xcc-8004.4869.1 0.67 -0.3 4,627,944 - Xcc-8004.4869.1 0.67 +0.1 4,627,944 - Xcc-8004.4869.1 0.67 +0.4 4,627,944 - Xcc-8004.4869.1 0.67 -0.6 4,627,944 - Xcc-8004.4869.1 0.67 +1.4 4,627,972 + Xcc-8004.4869.1 0.70 -0.4 4,627,972 + Xcc-8004.4869.1 0.70 -1.2 4,627,973 - Xcc-8004.4869.1 0.70 +1.1 4,627,984 + Xcc-8004.4869.1 0.71 +0.3 4,627,985 - Xcc-8004.4869.1 0.71 +0.3 4,627,985 - Xcc-8004.4869.1 0.71 +0.1 4,627,990 + Xcc-8004.4869.1 0.72 -1.0 4,627,990 + Xcc-8004.4869.1 0.72 +0.9 4,628,019 + Xcc-8004.4869.1 0.75 +1.4 4,628,019 + Xcc-8004.4869.1 0.75 +0.5 4,628,020 - Xcc-8004.4869.1 0.75 +0.1 4,628,020 - Xcc-8004.4869.1 0.75 -0.0 4,628,020 - Xcc-8004.4869.1 0.75 -0.1 4,628,025 + Xcc-8004.4869.1 0.75 +1.3 4,628,026 - Xcc-8004.4869.1 0.75 +1.1 4,628,026 - Xcc-8004.4869.1 0.75 +1.1 4,628,040 - Xcc-8004.4869.1 0.77 +0.9 4,628,079 + Xcc-8004.4869.1 0.81 +0.3 4,628,079 + Xcc-8004.4869.1 0.81 +0.1 4,628,080 - Xcc-8004.4869.1 0.81 -1.1 4,628,081 + Xcc-8004.4869.1 0.81 +0.5 4,628,082 - Xcc-8004.4869.1 0.81 -0.3 4,628,082 - Xcc-8004.4869.1 0.81 +0.0 4,628,089 + Xcc-8004.4869.1 0.82 +0.7 4,628,089 + Xcc-8004.4869.1 0.82 -1.6 4,628,147 + Xcc-8004.4869.1 0.87 +1.1 4,628,158 + Xcc-8004.4869.1 0.88 +0.6 4,628,158 + Xcc-8004.4869.1 0.88 +1.1 4,628,158 + Xcc-8004.4869.1 0.88 +0.9 4,628,188 + -0.9 4,628,188 + -0.8 4,628,191 + -1.2 4,628,191 + -0.1 4,628,191 + +1.7 4,628,192 - -0.1 4,628,227 + -1.8 4,628,231 + +0.3 4,628,231 + -0.1 4,628,239 - -0.5 4,628,261 - -0.6 4,628,261 - -0.1 4,628,261 - +0.6 4,628,280 + -1.5 4,628,281 - +0.8 4,628,342 + +0.1 4,628,342 + +1.3 4,628,343 - -0.9 4,628,343 - +1.3 4,628,392 + -0.3 4,628,410 + -0.5 4,628,410 + -0.4 4,628,413 + +0.1 4,628,414 - +0.4 4,628,414 - +1.4 4,628,414 - +0.3 4,628,414 - +0.4 4,628,426 + -1.2
Or see this region's nucleotide sequence