Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4867.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,626,971	+				-0.5
4,626,971	+				-1.2
4,626,987	+				+0.4
4,627,015	-				+1.1
4,627,028	+				-0.3
4,627,028	+				+0.4
4,627,029	-				-0.7
4,627,041	-				-0.2
4,627,073	-				-0.1
4,627,086	+				+1.6
4,627,086	+				-0.5
4,627,086	+				-0.1
4,627,086	+				-1.0
4,627,086	+				-1.9
4,627,087	-				-0.2
4,627,087	-				+0.2
4,627,087	-				+0.6
4,627,091	-				-0.0
4,627,103	+				-0.3
4,627,103	+				+0.6
4,627,103	+				+0.3
4,627,103	+				-0.7
4,627,104	-				+0.1
4,627,104	-				-1.2
4,627,110	+				-0.1
4,627,111	-				+0.8
4,627,172	+				+0.7
4,627,172	+				+0.5
4,627,172	+				+0.9
4,627,173	-				+0.4
4,627,173	-				+0.3
4,627,173	-				+1.7
4,627,173	-				+0.0
4,627,175	+				+0.3
4,627,175	+				-2.6
4,627,175	+				-0.4
4,627,179	-				-1.3
4,627,192	+				+0.1
4,627,193	-				+0.2
4,627,223	-				+0.3
4,627,229	+				+0.4
4,627,231	+				+2.1
4,627,232	-				+0.6
4,627,244	+				-0.2
4,627,259	+				+0.1
4,627,259	+				-1.8
4,627,260	-				-0.4
4,627,262	-				-0.5
4,627,357	+				-1.4
4,627,357	+				-1.7
4,627,384	+		Xcc-8004.4869.1	0.12	+0.7
4,627,409	+		Xcc-8004.4869.1	0.14	-0.1
4,627,409	+		Xcc-8004.4869.1	0.14	-0.6
4,627,410	-		Xcc-8004.4869.1	0.15	+0.5
4,627,410	-		Xcc-8004.4869.1	0.15	+1.0
4,627,410	-		Xcc-8004.4869.1	0.15	-0.3
4,627,410	-		Xcc-8004.4869.1	0.15	+0.2
4,627,410	-		Xcc-8004.4869.1	0.15	+2.6
4,627,416	+		Xcc-8004.4869.1	0.15	+0.5
4,627,417	-		Xcc-8004.4869.1	0.15	-1.0
4,627,474	+		Xcc-8004.4869.1	0.21	+1.1
4,627,474	+		Xcc-8004.4869.1	0.21	-0.5
4,627,475	-		Xcc-8004.4869.1	0.21	-0.4
4,627,475	-		Xcc-8004.4869.1	0.21	-0.7
4,627,475	-		Xcc-8004.4869.1	0.21	-0.0
4,627,475	-		Xcc-8004.4869.1	0.21	-0.2
4,627,515	+		Xcc-8004.4869.1	0.25	-0.1
4,627,515	+		Xcc-8004.4869.1	0.25	-0.6
4,627,515	+		Xcc-8004.4869.1	0.25	+1.1
4,627,515	+		Xcc-8004.4869.1	0.25	+0.5
4,627,516	-		Xcc-8004.4869.1	0.25	-0.6
4,627,516	-		Xcc-8004.4869.1	0.25	+1.4
4,627,534	+		Xcc-8004.4869.1	0.27	-0.1
4,627,534	+		Xcc-8004.4869.1	0.27	+0.3
4,627,534	+		Xcc-8004.4869.1	0.27	+0.6
4,627,535	-		Xcc-8004.4869.1	0.27	-2.4
4,627,535	-		Xcc-8004.4869.1	0.27	-0.1
4,627,535	-		Xcc-8004.4869.1	0.27	-1.9
4,627,535	-		Xcc-8004.4869.1	0.27	-2.2
4,627,570	+		Xcc-8004.4869.1	0.30	-0.2
4,627,570	+		Xcc-8004.4869.1	0.30	+0.8
4,627,571	-		Xcc-8004.4869.1	0.30	+0.8
4,627,571	-		Xcc-8004.4869.1	0.30	-0.1
4,627,571	-		Xcc-8004.4869.1	0.30	+0.9
4,627,571	-		Xcc-8004.4869.1	0.30	-0.2