Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4843.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4842.1 and Xcc-8004.4843.1 are separated by 36 nucleotidesXcc-8004.4843.1 and Xcc-8004.4844.1 overlap by 4 nucleotidesXcc-8004.4844.1 and Xcc-8004.4845.1 overlap by 20 nucleotides Xcc-8004.4842.1: Xcc-8004.4842.1 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 4,605,761 to 4,606,636 Xcc-8004.4842.1 Xcc-8004.4843.1: Xcc-8004.4843.1 - Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1, at 4,606,673 to 4,607,269 Xcc-8004.4843.1 Xcc-8004.4844.1: Xcc-8004.4844.1 - FIG01210764: hypothetical protein, at 4,607,266 to 4,607,439 Xcc-8004.4844.1 Xcc-8004.4845.1: Xcc-8004.4845.1 - Cytochrome c oxidase polypeptide I (EC 1.9.3.1), at 4,607,420 to 4,609,024 Xcc-8004.4845.1 Position (kb) 4606 4607 4608Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4605.749 kb on + strandat 4605.749 kb on + strandat 4605.750 kb on - strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.819 kb on + strandat 4605.820 kb on - strandat 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.239 kb on + strand, within Xcc-8004.4842.1at 4606.318 kb on - strand, within Xcc-8004.4842.1at 4606.413 kb on + strand, within Xcc-8004.4842.1at 4606.413 kb on + strand, within Xcc-8004.4842.1at 4606.414 kb on - strand, within Xcc-8004.4842.1at 4606.605 kb on + strandat 4606.605 kb on + strandat 4606.605 kb on + strandat 4606.606 kb on - strandat 4606.606 kb on - strandat 4606.657 kb on - strandat 4606.674 kb on + strandat 4606.744 kb on - strand, within Xcc-8004.4843.1at 4606.744 kb on - strand, within Xcc-8004.4843.1at 4606.753 kb on - strand, within Xcc-8004.4843.1at 4606.753 kb on - strand, within Xcc-8004.4843.1at 4606.762 kb on + strand, within Xcc-8004.4843.1at 4606.762 kb on + strand, within Xcc-8004.4843.1at 4606.762 kb on + strand, within Xcc-8004.4843.1at 4606.763 kb on - strand, within Xcc-8004.4843.1at 4606.763 kb on - strand, within Xcc-8004.4843.1at 4606.852 kb on + strand, within Xcc-8004.4843.1at 4606.881 kb on + strand, within Xcc-8004.4843.1at 4606.882 kb on - strand, within Xcc-8004.4843.1at 4606.925 kb on + strand, within Xcc-8004.4843.1at 4606.925 kb on + strand, within Xcc-8004.4843.1at 4606.925 kb on + strand, within Xcc-8004.4843.1at 4606.928 kb on + strand, within Xcc-8004.4843.1at 4606.928 kb on + strand, within Xcc-8004.4843.1at 4606.928 kb on + strand, within Xcc-8004.4843.1at 4606.928 kb on + strand, within Xcc-8004.4843.1at 4606.929 kb on - strand, within Xcc-8004.4843.1at 4606.929 kb on - strand, within Xcc-8004.4843.1at 4606.959 kb on + strand, within Xcc-8004.4843.1at 4606.960 kb on - strand, within Xcc-8004.4843.1at 4606.960 kb on - strand, within Xcc-8004.4843.1at 4606.960 kb on - strand, within Xcc-8004.4843.1at 4606.960 kb on - strand, within Xcc-8004.4843.1at 4607.239 kb on + strandat 4607.239 kb on + strandat 4607.240 kb on - strandat 4607.252 kb on - strandat 4607.264 kb on - strandat 4607.304 kb on - strand, within Xcc-8004.4844.1at 4607.482 kb on + strandat 4607.482 kb on + strandat 4607.482 kb on + strandat 4607.483 kb on - strandat 4607.563 kb on + strandat 4607.667 kb on + strand, within Xcc-8004.4845.1at 4607.667 kb on + strand, within Xcc-8004.4845.1at 4607.667 kb on + strand, within Xcc-8004.4845.1at 4607.668 kb on - strand, within Xcc-8004.4845.1at 4607.668 kb on - strand, within Xcc-8004.4845.1at 4607.668 kb on - strand, within Xcc-8004.4845.1at 4607.678 kb on - strand, within Xcc-8004.4845.1at 4607.781 kb on + strand, within Xcc-8004.4845.1at 4607.781 kb on + strand, within Xcc-8004.4845.1at 4607.781 kb on + strand, within Xcc-8004.4845.1at 4607.781 kb on + strand, within Xcc-8004.4845.1at 4607.781 kb on + strand, within Xcc-8004.4845.1at 4607.781 kb on + strand, within Xcc-8004.4845.1at 4607.781 kb on + strand, within Xcc-8004.4845.1at 4607.781 kb on + strand, within Xcc-8004.4845.1at 4607.782 kb on - strand, within Xcc-8004.4845.1at 4607.782 kb on - strand, within Xcc-8004.4845.1at 4607.782 kb on - strand, within Xcc-8004.4845.1at 4607.782 kb on - strand, within Xcc-8004.4845.1at 4607.782 kb on - strand, within Xcc-8004.4845.1at 4607.811 kb on + strand, within Xcc-8004.4845.1at 4607.811 kb on + strand, within Xcc-8004.4845.1at 4607.811 kb on + strand, within Xcc-8004.4845.1at 4607.812 kb on - strand, within Xcc-8004.4845.1at 4607.814 kb on + strand, within Xcc-8004.4845.1at 4607.814 kb on + strand, within Xcc-8004.4845.1at 4607.814 kb on + strand, within Xcc-8004.4845.1at 4607.814 kb on + strand, within Xcc-8004.4845.1at 4607.814 kb on + strand, within Xcc-8004.4845.1at 4607.815 kb on - strand, within Xcc-8004.4845.1at 4607.815 kb on - strand, within Xcc-8004.4845.1at 4607.815 kb on - strand, within Xcc-8004.4845.1at 4607.859 kb on + strand, within Xcc-8004.4845.1at 4607.860 kb on - strand, within Xcc-8004.4845.1at 4607.883 kb on + strand, within Xcc-8004.4845.1at 4607.883 kb on + strand, within Xcc-8004.4845.1at 4607.883 kb on + strand, within Xcc-8004.4845.1at 4607.884 kb on - strand, within Xcc-8004.4845.1at 4607.884 kb on - strand, within Xcc-8004.4845.1at 4607.896 kb on - strand, within Xcc-8004.4845.1at 4608.084 kb on + strand, within Xcc-8004.4845.1at 4608.084 kb on + strand, within Xcc-8004.4845.1at 4608.084 kb on + strand, within Xcc-8004.4845.1at 4608.171 kb on + strand, within Xcc-8004.4845.1at 4608.172 kb on - strand, within Xcc-8004.4845.1at 4608.172 kb on - strand, within Xcc-8004.4845.1at 4608.172 kb on - strand, within Xcc-8004.4845.1at 4608.261 kb on + strand, within Xcc-8004.4845.1at 4608.261 kb on + strand, within Xcc-8004.4845.1at 4608.261 kb on + strand, within Xcc-8004.4845.1at 4608.261 kb on + strand, within Xcc-8004.4845.1at 4608.262 kb on - strand, within Xcc-8004.4845.1at 4608.262 kb on - strand, within Xcc-8004.4845.1at 4608.262 kb on - strand, within Xcc-8004.4845.1at 4608.262 kb on - strand, within Xcc-8004.4845.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,605,749 + -0.8
4,605,749 + +0.4
4,605,750 - -0.7
4,605,771 + -0.3
4,605,771 + -2.3
4,605,771 + +0.2
4,605,771 + +1.5
4,605,771 + +0.7
4,605,771 + +0.3
4,605,771 + -0.0
4,605,771 + +0.4
4,605,771 + +0.3
4,605,771 + +0.4
4,605,772 - +0.3
4,605,772 - -1.3
4,605,772 - -0.6
4,605,772 - -2.0
4,605,772 - +0.7
4,605,772 - -0.1
4,605,819 + -0.6
4,605,820 - -0.3
4,605,963 + Xcc-8004.4842.1 0.23 -0.4
4,605,963 + Xcc-8004.4842.1 0.23 -0.6
4,605,963 + Xcc-8004.4842.1 0.23 -0.4
4,605,963 + Xcc-8004.4842.1 0.23 +0.8
4,605,963 + Xcc-8004.4842.1 0.23 -0.5
4,605,964 - Xcc-8004.4842.1 0.23 +0.5
4,605,964 - Xcc-8004.4842.1 0.23 -1.3
4,605,964 - Xcc-8004.4842.1 0.23 +3.3
4,605,964 - Xcc-8004.4842.1 0.23 +1.1
4,605,964 - Xcc-8004.4842.1 0.23 -0.3
4,605,964 - Xcc-8004.4842.1 0.23 -0.2
4,606,011 + Xcc-8004.4842.1 0.29 -0.9
4,606,011 + Xcc-8004.4842.1 0.29 -1.5
4,606,011 + Xcc-8004.4842.1 0.29 -0.4
4,606,011 + Xcc-8004.4842.1 0.29 -1.2
4,606,012 - Xcc-8004.4842.1 0.29 -1.6
4,606,012 - Xcc-8004.4842.1 0.29 -1.4
4,606,012 - Xcc-8004.4842.1 0.29 +0.8
4,606,012 - Xcc-8004.4842.1 0.29 +0.4
4,606,012 - Xcc-8004.4842.1 0.29 -0.8
4,606,239 + Xcc-8004.4842.1 0.55 -0.9
4,606,318 - Xcc-8004.4842.1 0.64 +0.1
4,606,413 + Xcc-8004.4842.1 0.74 -0.4
4,606,413 + Xcc-8004.4842.1 0.74 -0.7
4,606,414 - Xcc-8004.4842.1 0.75 +0.0
4,606,605 + +1.1
4,606,605 + +0.1
4,606,605 + -0.1
4,606,606 - -1.1
4,606,606 - +0.1
4,606,657 - +1.4
4,606,674 + +0.7
4,606,744 - Xcc-8004.4843.1 0.12 -1.5
4,606,744 - Xcc-8004.4843.1 0.12 +0.8
4,606,753 - Xcc-8004.4843.1 0.13 +0.9
4,606,753 - Xcc-8004.4843.1 0.13 +0.1
4,606,762 + Xcc-8004.4843.1 0.15 -0.0
4,606,762 + Xcc-8004.4843.1 0.15 -0.9
4,606,762 + Xcc-8004.4843.1 0.15 +0.2
4,606,763 - Xcc-8004.4843.1 0.15 -2.2
4,606,763 - Xcc-8004.4843.1 0.15 +0.7
4,606,852 + Xcc-8004.4843.1 0.30 -1.0
4,606,881 + Xcc-8004.4843.1 0.35 +0.1
4,606,882 - Xcc-8004.4843.1 0.35 +0.6
4,606,925 + Xcc-8004.4843.1 0.42 +0.2
4,606,925 + Xcc-8004.4843.1 0.42 +0.7
4,606,925 + Xcc-8004.4843.1 0.42 +0.1
4,606,928 + Xcc-8004.4843.1 0.43 +0.3
4,606,928 + Xcc-8004.4843.1 0.43 +1.0
4,606,928 + Xcc-8004.4843.1 0.43 -0.0
4,606,928 + Xcc-8004.4843.1 0.43 +0.4
4,606,929 - Xcc-8004.4843.1 0.43 +0.3
4,606,929 - Xcc-8004.4843.1 0.43 +0.9
4,606,959 + Xcc-8004.4843.1 0.48 +1.0
4,606,960 - Xcc-8004.4843.1 0.48 +0.5
4,606,960 - Xcc-8004.4843.1 0.48 -0.9
4,606,960 - Xcc-8004.4843.1 0.48 -0.8
4,606,960 - Xcc-8004.4843.1 0.48 +2.4
4,607,239 + -1.1
4,607,239 + -0.5
4,607,240 - +0.6
4,607,252 - +0.6
4,607,264 - +1.3
4,607,304 - Xcc-8004.4844.1 0.22 +0.6
4,607,482 + -0.2
4,607,482 + +0.1
4,607,482 + +1.0
4,607,483 - +0.2
4,607,563 + +0.4
4,607,667 + Xcc-8004.4845.1 0.15 -1.0
4,607,667 + Xcc-8004.4845.1 0.15 -0.3
4,607,667 + Xcc-8004.4845.1 0.15 -0.8
4,607,668 - Xcc-8004.4845.1 0.15 +0.4
4,607,668 - Xcc-8004.4845.1 0.15 +1.5
4,607,668 - Xcc-8004.4845.1 0.15 -2.2
4,607,678 - Xcc-8004.4845.1 0.16 -0.1
4,607,781 + Xcc-8004.4845.1 0.22 +0.1
4,607,781 + Xcc-8004.4845.1 0.22 -1.4
4,607,781 + Xcc-8004.4845.1 0.22 +1.6
4,607,781 + Xcc-8004.4845.1 0.22 +4.1
4,607,781 + Xcc-8004.4845.1 0.22 -0.6
4,607,781 + Xcc-8004.4845.1 0.22 +0.3
4,607,781 + Xcc-8004.4845.1 0.22 -0.2
4,607,781 + Xcc-8004.4845.1 0.22 +0.6
4,607,782 - Xcc-8004.4845.1 0.23 +0.3
4,607,782 - Xcc-8004.4845.1 0.23 +1.1
4,607,782 - Xcc-8004.4845.1 0.23 -0.1
4,607,782 - Xcc-8004.4845.1 0.23 -0.3
4,607,782 - Xcc-8004.4845.1 0.23 +1.6
4,607,811 + Xcc-8004.4845.1 0.24 +0.1
4,607,811 + Xcc-8004.4845.1 0.24 +1.0
4,607,811 + Xcc-8004.4845.1 0.24 -0.3
4,607,812 - Xcc-8004.4845.1 0.24 -0.4
4,607,814 + Xcc-8004.4845.1 0.25 +0.9
4,607,814 + Xcc-8004.4845.1 0.25 +0.9
4,607,814 + Xcc-8004.4845.1 0.25 +0.6
4,607,814 + Xcc-8004.4845.1 0.25 +0.9
4,607,814 + Xcc-8004.4845.1 0.25 -0.3
4,607,815 - Xcc-8004.4845.1 0.25 +1.2
4,607,815 - Xcc-8004.4845.1 0.25 +0.5
4,607,815 - Xcc-8004.4845.1 0.25 -1.6
4,607,859 + Xcc-8004.4845.1 0.27 -0.2
4,607,860 - Xcc-8004.4845.1 0.27 +0.2
4,607,883 + Xcc-8004.4845.1 0.29 +0.9
4,607,883 + Xcc-8004.4845.1 0.29 +0.1
4,607,883 + Xcc-8004.4845.1 0.29 +0.5
4,607,884 - Xcc-8004.4845.1 0.29 -0.1
4,607,884 - Xcc-8004.4845.1 0.29 -0.1
4,607,896 - Xcc-8004.4845.1 0.30 -0.3
4,608,084 + Xcc-8004.4845.1 0.41 +0.0
4,608,084 + Xcc-8004.4845.1 0.41 -1.2
4,608,084 + Xcc-8004.4845.1 0.41 -0.2
4,608,171 + Xcc-8004.4845.1 0.47 -0.8
4,608,172 - Xcc-8004.4845.1 0.47 +0.1
4,608,172 - Xcc-8004.4845.1 0.47 +0.2
4,608,172 - Xcc-8004.4845.1 0.47 -1.4
4,608,261 + Xcc-8004.4845.1 0.52 -0.7
4,608,261 + Xcc-8004.4845.1 0.52 +0.6
4,608,261 + Xcc-8004.4845.1 0.52 +0.0
4,608,261 + Xcc-8004.4845.1 0.52 +0.1
4,608,262 - Xcc-8004.4845.1 0.52 +0.7
4,608,262 - Xcc-8004.4845.1 0.52 -0.7
4,608,262 - Xcc-8004.4845.1 0.52 -0.2
4,608,262 - Xcc-8004.4845.1 0.52 -1.5

Or see this region's nucleotide sequence