Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4839.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4838.1 and Xcc-8004.4839.1 are separated by 10 nucleotidesXcc-8004.4839.1 and Xcc-8004.4840.1 are separated by 27 nucleotidesXcc-8004.4840.1 and Xcc-8004.4841.1 are separated by 60 nucleotides Xcc-8004.4838.1: Xcc-8004.4838.1 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 4,602,883 to 4,604,046 Xcc-8004.4838.1 Xcc-8004.4839.1: Xcc-8004.4839.1 - FIG01211359: hypothetical protein, at 4,604,057 to 4,604,632 Xcc-8004.4839.1 Xcc-8004.4840.1: Xcc-8004.4840.1 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 4,604,660 to 4,605,385 Xcc-8004.4840.1 Xcc-8004.4841.1: Xcc-8004.4841.1 - FIG01212439: hypothetical protein, at 4,605,446 to 4,605,664 Xcc-8004.4841.1 Position (kb) 4604 4605Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4603.097 kb on + strand, within Xcc-8004.4838.1at 4603.097 kb on + strand, within Xcc-8004.4838.1at 4603.097 kb on + strand, within Xcc-8004.4838.1at 4603.098 kb on - strand, within Xcc-8004.4838.1at 4603.098 kb on - strand, within Xcc-8004.4838.1at 4603.098 kb on - strand, within Xcc-8004.4838.1at 4603.178 kb on + strand, within Xcc-8004.4838.1at 4603.179 kb on - strand, within Xcc-8004.4838.1at 4603.305 kb on - strand, within Xcc-8004.4838.1at 4603.305 kb on - strand, within Xcc-8004.4838.1at 4603.305 kb on - strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.409 kb on - strand, within Xcc-8004.4838.1at 4603.582 kb on - strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.849 kb on + strand, within Xcc-8004.4838.1at 4603.849 kb on + strand, within Xcc-8004.4838.1at 4603.898 kb on + strand, within Xcc-8004.4838.1at 4603.899 kb on - strand, within Xcc-8004.4838.1at 4604.122 kb on - strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.158 kb on - strand, within Xcc-8004.4839.1at 4604.158 kb on - strand, within Xcc-8004.4839.1at 4604.158 kb on - strand, within Xcc-8004.4839.1at 4604.418 kb on + strand, within Xcc-8004.4839.1at 4604.418 kb on + strand, within Xcc-8004.4839.1at 4604.792 kb on + strand, within Xcc-8004.4840.1at 4604.793 kb on - strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.812 kb on - strand, within Xcc-8004.4840.1at 4604.812 kb on - strand, within Xcc-8004.4840.1at 4605.170 kb on + strand, within Xcc-8004.4840.1at 4605.170 kb on + strand, within Xcc-8004.4840.1at 4605.171 kb on - strand, within Xcc-8004.4840.1at 4605.498 kb on + strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.521 kb on + strand, within Xcc-8004.4841.1at 4605.521 kb on + strand, within Xcc-8004.4841.1at 4605.525 kb on - strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.627 kb on - strand, within Xcc-8004.4841.1at 4605.627 kb on - strand, within Xcc-8004.4841.1at 4605.627 kb on - strand, within Xcc-8004.4841.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,603,097 + Xcc-8004.4838.1 0.18 -0.5
4,603,097 + Xcc-8004.4838.1 0.18 +0.6
4,603,097 + Xcc-8004.4838.1 0.18 -2.6
4,603,098 - Xcc-8004.4838.1 0.18 -0.1
4,603,098 - Xcc-8004.4838.1 0.18 +1.6
4,603,098 - Xcc-8004.4838.1 0.18 +0.5
4,603,178 + Xcc-8004.4838.1 0.25 +0.2
4,603,179 - Xcc-8004.4838.1 0.25 +1.1
4,603,305 - Xcc-8004.4838.1 0.36 -0.1
4,603,305 - Xcc-8004.4838.1 0.36 +0.9
4,603,305 - Xcc-8004.4838.1 0.36 -0.8
4,603,408 + Xcc-8004.4838.1 0.45 +2.1
4,603,408 + Xcc-8004.4838.1 0.45 -0.9
4,603,408 + Xcc-8004.4838.1 0.45 -0.0
4,603,408 + Xcc-8004.4838.1 0.45 +1.0
4,603,409 - Xcc-8004.4838.1 0.45 -0.5
4,603,582 - Xcc-8004.4838.1 0.60 +1.2
4,603,667 + Xcc-8004.4838.1 0.67 +1.1
4,603,667 + Xcc-8004.4838.1 0.67 +1.2
4,603,667 + Xcc-8004.4838.1 0.67 -0.5
4,603,667 + Xcc-8004.4838.1 0.67 +0.6
4,603,667 + Xcc-8004.4838.1 0.67 +0.5
4,603,667 + Xcc-8004.4838.1 0.67 +0.6
4,603,668 - Xcc-8004.4838.1 0.67 +0.1
4,603,668 - Xcc-8004.4838.1 0.67 +0.3
4,603,668 - Xcc-8004.4838.1 0.67 +1.1
4,603,668 - Xcc-8004.4838.1 0.67 +0.2
4,603,668 - Xcc-8004.4838.1 0.67 +1.6
4,603,668 - Xcc-8004.4838.1 0.67 +0.2
4,603,668 - Xcc-8004.4838.1 0.67 -0.2
4,603,668 - Xcc-8004.4838.1 0.67 +0.7
4,603,668 - Xcc-8004.4838.1 0.67 +0.1
4,603,849 + Xcc-8004.4838.1 0.83 +0.0
4,603,849 + Xcc-8004.4838.1 0.83 +1.5
4,603,898 + Xcc-8004.4838.1 0.87 +0.3
4,603,899 - Xcc-8004.4838.1 0.87 -0.3
4,604,122 - Xcc-8004.4839.1 0.11 +0.6
4,604,157 + Xcc-8004.4839.1 0.17 +1.3
4,604,157 + Xcc-8004.4839.1 0.17 +0.3
4,604,157 + Xcc-8004.4839.1 0.17 +0.8
4,604,157 + Xcc-8004.4839.1 0.17 +0.6
4,604,157 + Xcc-8004.4839.1 0.17 +0.0
4,604,157 + Xcc-8004.4839.1 0.17 +1.1
4,604,157 + Xcc-8004.4839.1 0.17 +1.3
4,604,157 + Xcc-8004.4839.1 0.17 +0.7
4,604,157 + Xcc-8004.4839.1 0.17 +1.0
4,604,158 - Xcc-8004.4839.1 0.18 +0.1
4,604,158 - Xcc-8004.4839.1 0.18 -0.2
4,604,158 - Xcc-8004.4839.1 0.18 -0.4
4,604,418 + Xcc-8004.4839.1 0.63 -1.6
4,604,418 + Xcc-8004.4839.1 0.63 +0.2
4,604,792 + Xcc-8004.4840.1 0.18 -0.3
4,604,793 - Xcc-8004.4840.1 0.18 +0.1
4,604,811 + Xcc-8004.4840.1 0.21 -0.5
4,604,811 + Xcc-8004.4840.1 0.21 -0.3
4,604,811 + Xcc-8004.4840.1 0.21 -0.3
4,604,811 + Xcc-8004.4840.1 0.21 +0.0
4,604,811 + Xcc-8004.4840.1 0.21 -0.4
4,604,811 + Xcc-8004.4840.1 0.21 -0.4
4,604,811 + Xcc-8004.4840.1 0.21 -0.8
4,604,812 - Xcc-8004.4840.1 0.21 +0.5
4,604,812 - Xcc-8004.4840.1 0.21 -0.9
4,605,170 + Xcc-8004.4840.1 0.70 +0.5
4,605,170 + Xcc-8004.4840.1 0.70 +0.2
4,605,171 - Xcc-8004.4840.1 0.70 -0.1
4,605,498 + Xcc-8004.4841.1 0.24 +0.0
4,605,499 - Xcc-8004.4841.1 0.24 -0.8
4,605,499 - Xcc-8004.4841.1 0.24 +0.7
4,605,499 - Xcc-8004.4841.1 0.24 -0.0
4,605,499 - Xcc-8004.4841.1 0.24 +0.6
4,605,499 - Xcc-8004.4841.1 0.24 +3.4
4,605,499 - Xcc-8004.4841.1 0.24 -0.9
4,605,499 - Xcc-8004.4841.1 0.24 -0.8
4,605,521 + Xcc-8004.4841.1 0.34 +0.1
4,605,521 + Xcc-8004.4841.1 0.34 +0.9
4,605,525 - Xcc-8004.4841.1 0.36 +0.1
4,605,626 + Xcc-8004.4841.1 0.82 -0.7
4,605,626 + Xcc-8004.4841.1 0.82 -0.8
4,605,626 + Xcc-8004.4841.1 0.82 -0.5
4,605,626 + Xcc-8004.4841.1 0.82 -0.3
4,605,626 + Xcc-8004.4841.1 0.82 +0.2
4,605,626 + Xcc-8004.4841.1 0.82 +0.3
4,605,627 - Xcc-8004.4841.1 0.83 -1.1
4,605,627 - Xcc-8004.4841.1 0.83 +0.2
4,605,627 - Xcc-8004.4841.1 0.83 -0.8

Or see this region's nucleotide sequence