Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4753.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4752.1 and Xcc-8004.4753.1 are separated by 8 nucleotidesXcc-8004.4753.1 and Xcc-8004.4754.1 are separated by 122 nucleotidesXcc-8004.4754.1 and Xcc-8004.4755.1 overlap by 4 nucleotides Xcc-8004.4752.1: Xcc-8004.4752.1 - DNA topoisomerase I (EC 5.99.1.2), at 4,520,527 to 4,523,022 Xcc-8004.4752.1 Xcc-8004.4753.1: Xcc-8004.4753.1 - TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA, at 4,523,031 to 4,523,594 Xcc-8004.4753.1 Xcc-8004.4754.1: Xcc-8004.4754.1 - FIG01211156: hypothetical protein, at 4,523,717 to 4,524,457 Xcc-8004.4754.1 Xcc-8004.4755.1: Xcc-8004.4755.1 - FIG01210453: hypothetical protein, at 4,524,454 to 4,525,098 Xcc-8004.4755.1 Position (kb) 4523 4524Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4522.708 kb on + strand, within Xcc-8004.4752.1at 4522.708 kb on + strand, within Xcc-8004.4752.1at 4522.708 kb on + strand, within Xcc-8004.4752.1at 4522.708 kb on + strand, within Xcc-8004.4752.1at 4522.709 kb on - strand, within Xcc-8004.4752.1at 4522.709 kb on - strand, within Xcc-8004.4752.1at 4522.793 kb on + strandat 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.827 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.038 kb on + strand, within Xcc-8004.4754.1at 4524.038 kb on + strand, within Xcc-8004.4754.1at 4524.038 kb on + strand, within Xcc-8004.4754.1at 4524.038 kb on + strand, within Xcc-8004.4754.1at 4524.039 kb on - strand, within Xcc-8004.4754.1at 4524.039 kb on - strand, within Xcc-8004.4754.1at 4524.039 kb on - strand, within Xcc-8004.4754.1at 4524.040 kb on + strand, within Xcc-8004.4754.1at 4524.040 kb on + strand, within Xcc-8004.4754.1at 4524.041 kb on - strand, within Xcc-8004.4754.1at 4524.041 kb on - strand, within Xcc-8004.4754.1at 4524.041 kb on - strand, within Xcc-8004.4754.1at 4524.041 kb on - strand, within Xcc-8004.4754.1at 4524.041 kb on - strand, within Xcc-8004.4754.1at 4524.095 kb on + strand, within Xcc-8004.4754.1at 4524.095 kb on + strand, within Xcc-8004.4754.1at 4524.095 kb on + strand, within Xcc-8004.4754.1at 4524.095 kb on + strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.096 kb on - strand, within Xcc-8004.4754.1at 4524.218 kb on + strand, within Xcc-8004.4754.1at 4524.218 kb on + strand, within Xcc-8004.4754.1at 4524.218 kb on + strand, within Xcc-8004.4754.1at 4524.246 kb on - strand, within Xcc-8004.4754.1at 4524.269 kb on + strand, within Xcc-8004.4754.1at 4524.365 kb on + strand, within Xcc-8004.4754.1at 4524.365 kb on + strand, within Xcc-8004.4754.1at 4524.365 kb on + strand, within Xcc-8004.4754.1at 4524.366 kb on - strand, within Xcc-8004.4754.1at 4524.366 kb on - strand, within Xcc-8004.4754.1at 4524.453 kb on + strandat 4524.453 kb on + strandat 4524.453 kb on + strandat 4524.453 kb on + strandat 4524.454 kb on - strandat 4524.454 kb on - strandat 4524.454 kb on - strandat 4524.520 kb on + strand, within Xcc-8004.4755.1at 4524.520 kb on + strand, within Xcc-8004.4755.1at 4524.520 kb on + strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1at 4524.521 kb on - strand, within Xcc-8004.4755.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,522,708 + Xcc-8004.4752.1 0.87 -1.4
4,522,708 + Xcc-8004.4752.1 0.87 +0.5
4,522,708 + Xcc-8004.4752.1 0.87 +0.6
4,522,708 + Xcc-8004.4752.1 0.87 +3.6
4,522,709 - Xcc-8004.4752.1 0.87 -0.6
4,522,709 - Xcc-8004.4752.1 0.87 +3.1
4,522,793 + -1.1
4,523,813 + Xcc-8004.4754.1 0.13 -1.4
4,523,813 + Xcc-8004.4754.1 0.13 -0.1
4,523,813 + Xcc-8004.4754.1 0.13 -0.4
4,523,813 + Xcc-8004.4754.1 0.13 -0.9
4,523,814 - Xcc-8004.4754.1 0.13 +0.2
4,523,814 - Xcc-8004.4754.1 0.13 +0.4
4,523,814 - Xcc-8004.4754.1 0.13 -0.1
4,523,814 - Xcc-8004.4754.1 0.13 -0.1
4,523,814 - Xcc-8004.4754.1 0.13 -1.1
4,523,814 - Xcc-8004.4754.1 0.13 +0.6
4,523,827 + Xcc-8004.4754.1 0.15 +0.7
4,524,008 + Xcc-8004.4754.1 0.39 +0.5
4,524,008 + Xcc-8004.4754.1 0.39 +0.7
4,524,008 + Xcc-8004.4754.1 0.39 +0.2
4,524,008 + Xcc-8004.4754.1 0.39 +2.1
4,524,008 + Xcc-8004.4754.1 0.39 -2.3
4,524,009 - Xcc-8004.4754.1 0.39 -0.5
4,524,009 - Xcc-8004.4754.1 0.39 +0.7
4,524,009 - Xcc-8004.4754.1 0.39 -1.4
4,524,009 - Xcc-8004.4754.1 0.39 -1.1
4,524,009 - Xcc-8004.4754.1 0.39 -0.1
4,524,009 - Xcc-8004.4754.1 0.39 -0.5
4,524,038 + Xcc-8004.4754.1 0.43 -0.1
4,524,038 + Xcc-8004.4754.1 0.43 -0.1
4,524,038 + Xcc-8004.4754.1 0.43 -0.7
4,524,038 + Xcc-8004.4754.1 0.43 -0.6
4,524,039 - Xcc-8004.4754.1 0.43 -0.8
4,524,039 - Xcc-8004.4754.1 0.43 +1.4
4,524,039 - Xcc-8004.4754.1 0.43 +0.2
4,524,040 + Xcc-8004.4754.1 0.44 +0.4
4,524,040 + Xcc-8004.4754.1 0.44 -0.2
4,524,041 - Xcc-8004.4754.1 0.44 +0.8
4,524,041 - Xcc-8004.4754.1 0.44 -0.0
4,524,041 - Xcc-8004.4754.1 0.44 -1.8
4,524,041 - Xcc-8004.4754.1 0.44 -0.3
4,524,041 - Xcc-8004.4754.1 0.44 +0.8
4,524,095 + Xcc-8004.4754.1 0.51 +0.2
4,524,095 + Xcc-8004.4754.1 0.51 +0.5
4,524,095 + Xcc-8004.4754.1 0.51 -0.7
4,524,095 + Xcc-8004.4754.1 0.51 -0.8
4,524,096 - Xcc-8004.4754.1 0.51 -1.0
4,524,096 - Xcc-8004.4754.1 0.51 -0.8
4,524,096 - Xcc-8004.4754.1 0.51 -0.3
4,524,096 - Xcc-8004.4754.1 0.51 +1.7
4,524,096 - Xcc-8004.4754.1 0.51 +0.4
4,524,096 - Xcc-8004.4754.1 0.51 +0.7
4,524,096 - Xcc-8004.4754.1 0.51 +1.1
4,524,218 + Xcc-8004.4754.1 0.68 -1.2
4,524,218 + Xcc-8004.4754.1 0.68 +0.1
4,524,218 + Xcc-8004.4754.1 0.68 +0.2
4,524,246 - Xcc-8004.4754.1 0.71 -0.3
4,524,269 + Xcc-8004.4754.1 0.74 -1.2
4,524,365 + Xcc-8004.4754.1 0.87 +0.6
4,524,365 + Xcc-8004.4754.1 0.87 +0.4
4,524,365 + Xcc-8004.4754.1 0.87 +1.7
4,524,366 - Xcc-8004.4754.1 0.88 -1.0
4,524,366 - Xcc-8004.4754.1 0.88 +1.5
4,524,453 + +0.1
4,524,453 + -1.1
4,524,453 + +0.9
4,524,453 + +0.4
4,524,454 - +0.0
4,524,454 - -0.1
4,524,454 - -0.5
4,524,520 + Xcc-8004.4755.1 0.10 +0.4
4,524,520 + Xcc-8004.4755.1 0.10 +0.7
4,524,520 + Xcc-8004.4755.1 0.10 -0.1
4,524,521 - Xcc-8004.4755.1 0.10 -0.6
4,524,521 - Xcc-8004.4755.1 0.10 +1.7
4,524,521 - Xcc-8004.4755.1 0.10 +0.2
4,524,521 - Xcc-8004.4755.1 0.10 +0.4
4,524,521 - Xcc-8004.4755.1 0.10 +0.7
4,524,521 - Xcc-8004.4755.1 0.10 +0.5

Or see this region's nucleotide sequence