Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.470.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.469.1 and Xcc-8004.470.1 are separated by 67 nucleotidesXcc-8004.470.1 and Xcc-8004.471.1 are separated by 184 nucleotides Xcc-8004.469.1: Xcc-8004.469.1 - Glycerol kinase (EC 2.7.1.30), at 430,240 to 431,739 Xcc-8004.469.1 Xcc-8004.470.1: Xcc-8004.470.1 - Glycerol uptake facilitator protein, at 431,807 to 432,631 Xcc-8004.470.1 Xcc-8004.471.1: Xcc-8004.471.1 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 432,816 to 434,342 Xcc-8004.471.1 Position (kb) 431 432 433Strain fitness (log2 ratio) -1 0 1 2 3 4at 430.842 kb on - strand, within Xcc-8004.469.1at 430.946 kb on + strand, within Xcc-8004.469.1at 430.946 kb on + strand, within Xcc-8004.469.1at 430.947 kb on - strand, within Xcc-8004.469.1at 430.947 kb on - strand, within Xcc-8004.469.1at 430.947 kb on - strand, within Xcc-8004.469.1at 431.069 kb on + strand, within Xcc-8004.469.1at 431.069 kb on + strand, within Xcc-8004.469.1at 431.069 kb on + strand, within Xcc-8004.469.1at 431.069 kb on + strand, within Xcc-8004.469.1at 431.070 kb on - strand, within Xcc-8004.469.1at 431.165 kb on + strand, within Xcc-8004.469.1at 431.165 kb on + strand, within Xcc-8004.469.1at 431.165 kb on + strand, within Xcc-8004.469.1at 431.165 kb on + strand, within Xcc-8004.469.1at 431.166 kb on - strand, within Xcc-8004.469.1at 431.166 kb on - strand, within Xcc-8004.469.1at 431.166 kb on - strand, within Xcc-8004.469.1at 431.192 kb on + strand, within Xcc-8004.469.1at 431.192 kb on + strand, within Xcc-8004.469.1at 431.242 kb on - strand, within Xcc-8004.469.1at 431.337 kb on - strand, within Xcc-8004.469.1at 431.447 kb on + strand, within Xcc-8004.469.1at 431.447 kb on + strand, within Xcc-8004.469.1at 431.448 kb on - strand, within Xcc-8004.469.1at 431.448 kb on - strand, within Xcc-8004.469.1at 431.726 kb on + strandat 431.727 kb on - strandat 431.727 kb on - strandat 431.889 kb on + strandat 431.946 kb on + strand, within Xcc-8004.470.1at 431.946 kb on + strand, within Xcc-8004.470.1at 431.947 kb on - strand, within Xcc-8004.470.1at 431.947 kb on - strand, within Xcc-8004.470.1at 431.947 kb on - strand, within Xcc-8004.470.1at 431.947 kb on - strand, within Xcc-8004.470.1at 431.991 kb on + strand, within Xcc-8004.470.1at 432.151 kb on + strand, within Xcc-8004.470.1at 432.285 kb on + strand, within Xcc-8004.470.1at 432.285 kb on + strand, within Xcc-8004.470.1at 432.285 kb on + strand, within Xcc-8004.470.1at 432.286 kb on - strand, within Xcc-8004.470.1at 432.286 kb on - strand, within Xcc-8004.470.1at 432.286 kb on - strand, within Xcc-8004.470.1at 432.286 kb on - strand, within Xcc-8004.470.1at 432.315 kb on + strand, within Xcc-8004.470.1at 432.315 kb on + strand, within Xcc-8004.470.1at 432.316 kb on - strand, within Xcc-8004.470.1at 432.459 kb on + strand, within Xcc-8004.470.1at 432.459 kb on + strand, within Xcc-8004.470.1at 432.459 kb on + strand, within Xcc-8004.470.1at 432.459 kb on + strand, within Xcc-8004.470.1at 432.459 kb on + strand, within Xcc-8004.470.1at 432.459 kb on + strand, within Xcc-8004.470.1at 432.459 kb on + strand, within Xcc-8004.470.1at 432.459 kb on + strand, within Xcc-8004.470.1at 432.459 kb on + strand, within Xcc-8004.470.1at 432.459 kb on + strand, within Xcc-8004.470.1at 432.460 kb on - strand, within Xcc-8004.470.1at 432.460 kb on - strand, within Xcc-8004.470.1at 432.460 kb on - strand, within Xcc-8004.470.1at 432.460 kb on - strand, within Xcc-8004.470.1at 432.460 kb on - strand, within Xcc-8004.470.1at 432.460 kb on - strand, within Xcc-8004.470.1at 432.460 kb on - strand, within Xcc-8004.470.1at 432.460 kb on - strand, within Xcc-8004.470.1at 432.460 kb on - strand, within Xcc-8004.470.1at 432.460 kb on - strand, within Xcc-8004.470.1at 432.534 kb on + strand, within Xcc-8004.470.1at 432.534 kb on + strand, within Xcc-8004.470.1at 432.534 kb on + strand, within Xcc-8004.470.1at 432.543 kb on + strand, within Xcc-8004.470.1at 432.543 kb on + strand, within Xcc-8004.470.1at 432.543 kb on + strand, within Xcc-8004.470.1at 432.543 kb on + strand, within Xcc-8004.470.1at 432.544 kb on - strand, within Xcc-8004.470.1at 432.544 kb on - strand, within Xcc-8004.470.1at 432.544 kb on - strand, within Xcc-8004.470.1at 432.544 kb on - strand, within Xcc-8004.470.1at 432.657 kb on + strandat 432.771 kb on + strandat 432.906 kb on + strandat 432.979 kb on + strand, within Xcc-8004.471.1at 433.070 kb on + strand, within Xcc-8004.471.1at 433.330 kb on + strand, within Xcc-8004.471.1at 433.330 kb on + strand, within Xcc-8004.471.1at 433.435 kb on + strand, within Xcc-8004.471.1at 433.507 kb on + strand, within Xcc-8004.471.1at 433.549 kb on + strand, within Xcc-8004.471.1at 433.549 kb on + strand, within Xcc-8004.471.1at 433.549 kb on + strand, within Xcc-8004.471.1at 433.594 kb on + strand, within Xcc-8004.471.1at 433.594 kb on + strand, within Xcc-8004.471.1at 433.594 kb on + strand, within Xcc-8004.471.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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430,842 - Xcc-8004.469.1 0.40 +0.0
430,946 + Xcc-8004.469.1 0.47 -0.1
430,946 + Xcc-8004.469.1 0.47 +2.7
430,947 - Xcc-8004.469.1 0.47 -0.4
430,947 - Xcc-8004.469.1 0.47 -0.6
430,947 - Xcc-8004.469.1 0.47 +1.1
431,069 + Xcc-8004.469.1 0.55 +0.7
431,069 + Xcc-8004.469.1 0.55 +1.2
431,069 + Xcc-8004.469.1 0.55 +2.5
431,069 + Xcc-8004.469.1 0.55 +0.1
431,070 - Xcc-8004.469.1 0.55 +1.2
431,165 + Xcc-8004.469.1 0.62 +0.1
431,165 + Xcc-8004.469.1 0.62 -0.9
431,165 + Xcc-8004.469.1 0.62 -0.1
431,165 + Xcc-8004.469.1 0.62 -0.2
431,166 - Xcc-8004.469.1 0.62 +0.2
431,166 - Xcc-8004.469.1 0.62 +0.3
431,166 - Xcc-8004.469.1 0.62 +0.3
431,192 + Xcc-8004.469.1 0.63 +1.0
431,192 + Xcc-8004.469.1 0.63 +0.2
431,242 - Xcc-8004.469.1 0.67 +0.5
431,337 - Xcc-8004.469.1 0.73 +0.8
431,447 + Xcc-8004.469.1 0.80 +1.0
431,447 + Xcc-8004.469.1 0.80 +2.0
431,448 - Xcc-8004.469.1 0.81 +0.2
431,448 - Xcc-8004.469.1 0.81 -0.2
431,726 + -0.2
431,727 - -0.2
431,727 - +0.5
431,889 + -0.4
431,946 + Xcc-8004.470.1 0.17 +0.4
431,946 + Xcc-8004.470.1 0.17 +0.7
431,947 - Xcc-8004.470.1 0.17 +0.2
431,947 - Xcc-8004.470.1 0.17 +1.4
431,947 - Xcc-8004.470.1 0.17 +0.9
431,947 - Xcc-8004.470.1 0.17 +1.0
431,991 + Xcc-8004.470.1 0.22 +1.8
432,151 + Xcc-8004.470.1 0.42 -0.9
432,285 + Xcc-8004.470.1 0.58 +0.6
432,285 + Xcc-8004.470.1 0.58 +1.8
432,285 + Xcc-8004.470.1 0.58 +0.2
432,286 - Xcc-8004.470.1 0.58 -0.8
432,286 - Xcc-8004.470.1 0.58 -1.5
432,286 - Xcc-8004.470.1 0.58 +1.3
432,286 - Xcc-8004.470.1 0.58 +1.1
432,315 + Xcc-8004.470.1 0.62 -0.3
432,315 + Xcc-8004.470.1 0.62 -0.3
432,316 - Xcc-8004.470.1 0.62 -0.5
432,459 + Xcc-8004.470.1 0.79 +1.7
432,459 + Xcc-8004.470.1 0.79 +2.0
432,459 + Xcc-8004.470.1 0.79 -1.2
432,459 + Xcc-8004.470.1 0.79 +2.2
432,459 + Xcc-8004.470.1 0.79 +0.7
432,459 + Xcc-8004.470.1 0.79 +0.0
432,459 + Xcc-8004.470.1 0.79 +0.8
432,459 + Xcc-8004.470.1 0.79 +0.4
432,459 + Xcc-8004.470.1 0.79 +0.9
432,459 + Xcc-8004.470.1 0.79 +0.4
432,460 - Xcc-8004.470.1 0.79 -0.1
432,460 - Xcc-8004.470.1 0.79 +0.9
432,460 - Xcc-8004.470.1 0.79 -1.5
432,460 - Xcc-8004.470.1 0.79 -0.9
432,460 - Xcc-8004.470.1 0.79 -0.5
432,460 - Xcc-8004.470.1 0.79 +1.0
432,460 - Xcc-8004.470.1 0.79 +0.5
432,460 - Xcc-8004.470.1 0.79 -0.9
432,460 - Xcc-8004.470.1 0.79 +0.3
432,460 - Xcc-8004.470.1 0.79 +0.1
432,534 + Xcc-8004.470.1 0.88 +1.1
432,534 + Xcc-8004.470.1 0.88 +0.9
432,534 + Xcc-8004.470.1 0.88 +0.2
432,543 + Xcc-8004.470.1 0.89 +1.6
432,543 + Xcc-8004.470.1 0.89 +0.4
432,543 + Xcc-8004.470.1 0.89 +1.0
432,543 + Xcc-8004.470.1 0.89 +0.4
432,544 - Xcc-8004.470.1 0.89 +0.6
432,544 - Xcc-8004.470.1 0.89 +1.3
432,544 - Xcc-8004.470.1 0.89 +0.1
432,544 - Xcc-8004.470.1 0.89 +0.4
432,657 + +1.3
432,771 + -1.1
432,906 + +0.0
432,979 + Xcc-8004.471.1 0.11 +3.0
433,070 + Xcc-8004.471.1 0.17 +0.4
433,330 + Xcc-8004.471.1 0.34 -0.6
433,330 + Xcc-8004.471.1 0.34 +0.4
433,435 + Xcc-8004.471.1 0.41 +1.4
433,507 + Xcc-8004.471.1 0.45 +0.1
433,549 + Xcc-8004.471.1 0.48 +4.0
433,549 + Xcc-8004.471.1 0.48 +0.3
433,549 + Xcc-8004.471.1 0.48 +1.1
433,594 + Xcc-8004.471.1 0.51 +0.5
433,594 + Xcc-8004.471.1 0.51 +0.2
433,594 + Xcc-8004.471.1 0.51 -0.7

Or see this region's nucleotide sequence