Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4602.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,385,684	-				+0.9
4,385,684	-				-1.3
4,385,684	-				+0.3
4,385,710	+				+1.1
4,385,711	-				+0.1
4,385,711	-				-0.0
4,385,818	+		Xcc-8004.4601.1	0.17	-0.7
4,385,819	-		Xcc-8004.4601.1	0.17	-0.0
4,385,819	-		Xcc-8004.4601.1	0.17	-0.2
4,385,884	+		Xcc-8004.4601.1	0.25	-2.1
4,385,884	+		Xcc-8004.4601.1	0.25	+0.1
4,385,884	+		Xcc-8004.4601.1	0.25	-1.2
4,385,884	+		Xcc-8004.4601.1	0.25	-1.0
4,385,884	+		Xcc-8004.4601.1	0.25	-0.8
4,385,885	-		Xcc-8004.4601.1	0.25	-1.3
4,385,885	-		Xcc-8004.4601.1	0.25	-0.5
4,386,143	-		Xcc-8004.4601.1	0.58	-1.1
4,386,208	+		Xcc-8004.4601.1	0.66	+0.2
4,386,208	+		Xcc-8004.4601.1	0.66	-0.7
4,386,238	+		Xcc-8004.4601.1	0.69	+0.8
4,386,238	+		Xcc-8004.4601.1	0.69	-0.4
4,386,239	-		Xcc-8004.4601.1	0.70	+0.6
4,386,239	-		Xcc-8004.4601.1	0.70	+0.3
4,386,286	+		Xcc-8004.4601.1	0.75	-0.0
4,386,286	+		Xcc-8004.4601.1	0.75	-1.3
4,386,286	+		Xcc-8004.4601.1	0.75	-0.1
4,386,286	+		Xcc-8004.4601.1	0.75	-0.1
4,386,287	-		Xcc-8004.4601.1	0.76	+1.2
4,386,287	-		Xcc-8004.4601.1	0.76	-0.7
4,386,287	-		Xcc-8004.4601.1	0.76	+0.1
4,386,287	-		Xcc-8004.4601.1	0.76	-1.5
4,386,287	-		Xcc-8004.4601.1	0.76	+0.7
4,386,287	-		Xcc-8004.4601.1	0.76	+0.7
4,386,287	-		Xcc-8004.4601.1	0.76	+1.1
4,386,287	-		Xcc-8004.4601.1	0.76	-0.6
4,386,287	-		Xcc-8004.4601.1	0.76	-0.9
4,386,484	+				-0.8
4,386,484	+				-1.1
4,386,484	+				-0.4
4,386,485	-				-0.4
4,386,485	-				+0.5
4,386,485	-				-0.1
4,386,485	-				+1.8
4,386,485	-				+0.5
4,386,485	-				+1.8
4,386,535	+				+1.7
4,386,535	+				+0.1
4,386,535	+				-0.5
4,386,535	+				-0.2
4,386,536	-				-2.3
4,386,536	-				-0.8
4,386,536	-				+0.9
4,386,680	+				+0.4
4,386,680	+				-0.2
4,386,680	+				+0.2
4,386,680	+				-0.7
4,386,680	+				+1.5
4,386,680	+				+0.2
4,386,680	+				+0.4
4,386,680	+				-1.4
4,386,681	-				-1.0
4,386,681	-				-0.7
4,386,681	-				+1.5
4,386,681	-				+0.3
4,386,697	+				-0.5
4,386,796	+		Xcc-8004.4602.1	0.16	+0.4
4,386,797	-		Xcc-8004.4602.1	0.16	-0.6
4,387,027	+		Xcc-8004.4602.1	0.49	+1.1
4,387,027	+		Xcc-8004.4602.1	0.49	+0.1
4,387,027	+		Xcc-8004.4602.1	0.49	+0.8
4,387,028	-		Xcc-8004.4602.1	0.49	+1.1
4,387,028	-		Xcc-8004.4602.1	0.49	+1.0
4,387,181	-		Xcc-8004.4602.1	0.71	-1.0
4,387,181	-		Xcc-8004.4602.1	0.71	-1.1
4,387,181	-		Xcc-8004.4602.1	0.71	+0.1
4,387,382	+				+0.7
4,387,382	+				-0.5
4,387,382	+				-0.5
4,387,382	+				+2.1
4,387,382	+				+1.5
4,387,521	+		Xcc-8004.4603.1	0.14	-0.5
4,387,521	+		Xcc-8004.4603.1	0.14	-0.5
4,387,521	+		Xcc-8004.4603.1	0.14	+0.3
4,387,521	+		Xcc-8004.4603.1	0.14	+0.7
4,387,521	+		Xcc-8004.4603.1	0.14	-0.4
4,387,521	+		Xcc-8004.4603.1	0.14	-1.0
4,387,521	+		Xcc-8004.4603.1	0.14	-0.9
4,387,522	-		Xcc-8004.4603.1	0.14	+0.6
4,387,522	-		Xcc-8004.4603.1	0.14	-0.1
4,387,522	-		Xcc-8004.4603.1	0.14	+0.2
4,387,522	-		Xcc-8004.4603.1	0.14	-0.6
4,387,522	-		Xcc-8004.4603.1	0.14	+0.9
4,387,566	+		Xcc-8004.4603.1	0.19	+0.2
4,387,566	+		Xcc-8004.4603.1	0.19	-1.4
4,387,566	+		Xcc-8004.4603.1	0.19	+0.0
4,387,566	+		Xcc-8004.4603.1	0.19	-0.4
4,387,566	+		Xcc-8004.4603.1	0.19	+0.5
4,387,566	+		Xcc-8004.4603.1	0.19	+0.5
4,387,566	+		Xcc-8004.4603.1	0.19	+1.6
4,387,566	+		Xcc-8004.4603.1	0.19	+0.7
4,387,567	-		Xcc-8004.4603.1	0.19	-1.2
4,387,567	-		Xcc-8004.4603.1	0.19	-1.6
4,387,567	-		Xcc-8004.4603.1	0.19	+1.8
4,387,936	+		Xcc-8004.4603.1	0.55	-0.2
4,387,937	-		Xcc-8004.4603.1	0.55	-0.7
4,387,978	-		Xcc-8004.4603.1	0.59	+0.4
4,387,978	-		Xcc-8004.4603.1	0.59	+0.3
4,388,355	+				-0.3
4,388,356	-				-0.8
4,388,356	-				-1.1
4,388,356	-				+1.1
4,388,356	-				-1.3
4,388,356	-				+1.5