Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4559.1
Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X |
|---|---|---|---|---|---|
| remove | |||||
| 4,354,636 | + | Xcc-8004.4558.1 | 0.30 | -0.7 | |
| 4,354,714 | - | Xcc-8004.4558.1 | 0.37 | -0.2 | |
| 4,354,728 | + | Xcc-8004.4558.1 | 0.38 | +0.5 | |
| 4,354,952 | - | Xcc-8004.4558.1 | 0.56 | -0.6 | |
| 4,355,588 | + | -0.9 | |||
| 4,355,911 | + | Xcc-8004.4559.1 | 0.66 | -1.1 | |
| 4,355,963 | - | Xcc-8004.4559.1 | 0.77 | -0.9 | |
| 4,356,006 | + | Xcc-8004.4559.1 | 0.87 | -0.1 | |
| 4,356,007 | - | Xcc-8004.4559.1 | 0.87 | -0.5 | |
| 4,356,007 | - | Xcc-8004.4559.1 | 0.87 | -0.7 | |
| 4,356,067 | - | -0.4 | |||
| 4,356,112 | - | +0.2 | |||
| 4,356,552 | - | Xcc-8004.4560.1 | 0.28 | +0.2 | |
| 4,356,932 | + | Xcc-8004.4560.1 | 0.54 | +0.2 | |
| 4,356,933 | - | Xcc-8004.4560.1 | 0.54 | +0.2 | |
| 4,356,933 | - | Xcc-8004.4560.1 | 0.54 | -0.5 | |
| 4,356,933 | - | Xcc-8004.4560.1 | 0.54 | -0.7 | |
| 4,356,933 | - | Xcc-8004.4560.1 | 0.54 | +1.5 | |
| 4,357,041 | + | Xcc-8004.4560.1 | 0.62 | -1.7 | |
| 4,357,041 | + | Xcc-8004.4560.1 | 0.62 | +0.3 | |
| 4,357,065 | - | Xcc-8004.4560.1 | 0.64 | +0.3 |
Or see this region's nucleotide sequence