Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4489.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4488.1 and Xcc-8004.4489.1 are separated by 59 nucleotidesXcc-8004.4489.1 and Xcc-8004.4490.1 are separated by 48 nucleotides Xcc-8004.4488.1: Xcc-8004.4488.1 - Electron transfer flavoprotein, alpha subunit, at 4,296,386 to 4,297,330 Xcc-8004.4488.1 Xcc-8004.4489.1: Xcc-8004.4489.1 - hypothetical protein, at 4,297,390 to 4,297,737 Xcc-8004.4489.1 Xcc-8004.4490.1: Xcc-8004.4490.1 - Lipopolysaccharide biosynthesis protein RffA, at 4,297,786 to 4,298,889 Xcc-8004.4490.1 Position (kb) 4297 4298Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4297.352 kb on + strandat 4297.352 kb on + strandat 4297.353 kb on - strandat 4297.353 kb on - strandat 4297.366 kb on - strandat 4297.446 kb on + strand, within Xcc-8004.4489.1at 4297.447 kb on - strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.577 kb on - strand, within Xcc-8004.4489.1at 4297.577 kb on - strand, within Xcc-8004.4489.1at 4297.577 kb on - strand, within Xcc-8004.4489.1at 4297.675 kb on - strand, within Xcc-8004.4489.1at 4297.678 kb on + strand, within Xcc-8004.4489.1at 4297.678 kb on + strand, within Xcc-8004.4489.1at 4297.678 kb on + strand, within Xcc-8004.4489.1at 4297.678 kb on + strand, within Xcc-8004.4489.1at 4297.678 kb on + strand, within Xcc-8004.4489.1at 4297.679 kb on - strand, within Xcc-8004.4489.1at 4297.679 kb on - strand, within Xcc-8004.4489.1at 4297.679 kb on - strand, within Xcc-8004.4489.1at 4297.717 kb on + strandat 4297.718 kb on - strandat 4297.718 kb on - strandat 4297.718 kb on - strandat 4297.735 kb on + strandat 4297.735 kb on + strandat 4297.736 kb on - strandat 4297.736 kb on - strandat 4297.765 kb on + strandat 4297.765 kb on + strandat 4297.766 kb on - strandat 4297.766 kb on - strandat 4297.766 kb on - strandat 4297.882 kb on + strandat 4297.883 kb on - strandat 4297.883 kb on - strandat 4297.883 kb on - strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.198 kb on - strand, within Xcc-8004.4490.1at 4298.344 kb on + strand, within Xcc-8004.4490.1at 4298.345 kb on - strand, within Xcc-8004.4490.1at 4298.438 kb on - strand, within Xcc-8004.4490.1at 4298.438 kb on - strand, within Xcc-8004.4490.1at 4298.455 kb on + strand, within Xcc-8004.4490.1at 4298.456 kb on - strand, within Xcc-8004.4490.1at 4298.456 kb on - strand, within Xcc-8004.4490.1at 4298.523 kb on + strand, within Xcc-8004.4490.1at 4298.523 kb on + strand, within Xcc-8004.4490.1at 4298.523 kb on + strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.650 kb on + strand, within Xcc-8004.4490.1at 4298.650 kb on + strand, within Xcc-8004.4490.1at 4298.650 kb on + strand, within Xcc-8004.4490.1at 4298.651 kb on - strand, within Xcc-8004.4490.1at 4298.651 kb on - strand, within Xcc-8004.4490.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,297,352 + +0.5
4,297,352 + -0.8
4,297,353 - +0.8
4,297,353 - -0.6
4,297,366 - +0.2
4,297,446 + Xcc-8004.4489.1 0.16 -0.6
4,297,447 - Xcc-8004.4489.1 0.16 -0.4
4,297,462 + Xcc-8004.4489.1 0.21 -0.9
4,297,462 + Xcc-8004.4489.1 0.21 -0.9
4,297,462 + Xcc-8004.4489.1 0.21 -1.3
4,297,462 + Xcc-8004.4489.1 0.21 -1.0
4,297,462 + Xcc-8004.4489.1 0.21 -1.5
4,297,462 + Xcc-8004.4489.1 0.21 -1.7
4,297,463 - Xcc-8004.4489.1 0.21 -0.3
4,297,463 - Xcc-8004.4489.1 0.21 -0.4
4,297,463 - Xcc-8004.4489.1 0.21 -0.5
4,297,463 - Xcc-8004.4489.1 0.21 +0.1
4,297,463 - Xcc-8004.4489.1 0.21 +0.3
4,297,463 - Xcc-8004.4489.1 0.21 +0.9
4,297,463 - Xcc-8004.4489.1 0.21 -0.8
4,297,463 - Xcc-8004.4489.1 0.21 +0.9
4,297,463 - Xcc-8004.4489.1 0.21 +1.0
4,297,577 - Xcc-8004.4489.1 0.54 -0.6
4,297,577 - Xcc-8004.4489.1 0.54 -2.9
4,297,577 - Xcc-8004.4489.1 0.54 -0.3
4,297,675 - Xcc-8004.4489.1 0.82 -0.3
4,297,678 + Xcc-8004.4489.1 0.83 +0.2
4,297,678 + Xcc-8004.4489.1 0.83 +1.5
4,297,678 + Xcc-8004.4489.1 0.83 +0.8
4,297,678 + Xcc-8004.4489.1 0.83 -1.2
4,297,678 + Xcc-8004.4489.1 0.83 -0.8
4,297,679 - Xcc-8004.4489.1 0.83 +0.3
4,297,679 - Xcc-8004.4489.1 0.83 -0.0
4,297,679 - Xcc-8004.4489.1 0.83 -0.5
4,297,717 + +1.0
4,297,718 - +1.8
4,297,718 - -0.9
4,297,718 - -0.0
4,297,735 + -1.8
4,297,735 + -0.6
4,297,736 - -2.3
4,297,736 - -0.6
4,297,765 + +0.0
4,297,765 + +0.7
4,297,766 - -0.0
4,297,766 - -0.1
4,297,766 - -0.6
4,297,882 + +0.6
4,297,883 - -0.1
4,297,883 - +0.2
4,297,883 - -0.5
4,297,885 + -0.0
4,297,885 + -2.1
4,297,885 + +2.1
4,297,885 + +0.7
4,297,885 + +1.2
4,297,885 + +1.0
4,297,885 + -0.2
4,297,885 + -0.5
4,297,885 + +0.3
4,297,886 - -0.7
4,297,886 - -0.2
4,297,886 - -1.1
4,297,886 - -0.0
4,297,886 - -0.2
4,297,886 - -0.1
4,297,886 - +1.0
4,297,886 - +0.4
4,298,053 + Xcc-8004.4490.1 0.24 +0.1
4,298,053 + Xcc-8004.4490.1 0.24 +1.0
4,298,053 + Xcc-8004.4490.1 0.24 -1.0
4,298,053 + Xcc-8004.4490.1 0.24 +1.2
4,298,053 + Xcc-8004.4490.1 0.24 +0.4
4,298,053 + Xcc-8004.4490.1 0.24 -1.2
4,298,053 + Xcc-8004.4490.1 0.24 +0.3
4,298,054 - Xcc-8004.4490.1 0.24 -0.8
4,298,054 - Xcc-8004.4490.1 0.24 -0.1
4,298,054 - Xcc-8004.4490.1 0.24 +1.4
4,298,054 - Xcc-8004.4490.1 0.24 -0.3
4,298,054 - Xcc-8004.4490.1 0.24 -0.1
4,298,054 - Xcc-8004.4490.1 0.24 +0.0
4,298,054 - Xcc-8004.4490.1 0.24 +0.2
4,298,054 - Xcc-8004.4490.1 0.24 +0.4
4,298,197 + Xcc-8004.4490.1 0.37 -1.1
4,298,197 + Xcc-8004.4490.1 0.37 -0.6
4,298,197 + Xcc-8004.4490.1 0.37 +0.4
4,298,197 + Xcc-8004.4490.1 0.37 -1.2
4,298,198 - Xcc-8004.4490.1 0.37 -1.7
4,298,344 + Xcc-8004.4490.1 0.51 +0.0
4,298,345 - Xcc-8004.4490.1 0.51 -0.7
4,298,438 - Xcc-8004.4490.1 0.59 +0.8
4,298,438 - Xcc-8004.4490.1 0.59 +0.5
4,298,455 + Xcc-8004.4490.1 0.61 +2.0
4,298,456 - Xcc-8004.4490.1 0.61 -0.4
4,298,456 - Xcc-8004.4490.1 0.61 -0.4
4,298,523 + Xcc-8004.4490.1 0.67 -0.6
4,298,523 + Xcc-8004.4490.1 0.67 +0.3
4,298,523 + Xcc-8004.4490.1 0.67 +1.3
4,298,524 - Xcc-8004.4490.1 0.67 -1.5
4,298,524 - Xcc-8004.4490.1 0.67 -0.4
4,298,524 - Xcc-8004.4490.1 0.67 -0.7
4,298,524 - Xcc-8004.4490.1 0.67 -1.3
4,298,524 - Xcc-8004.4490.1 0.67 -1.0
4,298,524 - Xcc-8004.4490.1 0.67 +0.2
4,298,524 - Xcc-8004.4490.1 0.67 -1.3
4,298,650 + Xcc-8004.4490.1 0.78 -0.3
4,298,650 + Xcc-8004.4490.1 0.78 +1.0
4,298,650 + Xcc-8004.4490.1 0.78 -1.2
4,298,651 - Xcc-8004.4490.1 0.78 -1.2
4,298,651 - Xcc-8004.4490.1 0.78 +0.1

Or see this region's nucleotide sequence