Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4485.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4483.1 and Xcc-8004.4484.1 overlap by 4 nucleotidesXcc-8004.4484.1 and Xcc-8004.4485.1 overlap by 4 nucleotidesXcc-8004.4485.1 and Xcc-8004.4486.1 are separated by 63 nucleotides Xcc-8004.4483.1: Xcc-8004.4483.1 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 4,291,946 to 4,292,854 Xcc-8004.4483.1 Xcc-8004.4484.1: Xcc-8004.4484.1 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 4,292,851 to 4,293,408 Xcc-8004.4484.1 Xcc-8004.4485.1: Xcc-8004.4485.1 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 4,293,405 to 4,294,292 Xcc-8004.4485.1 Xcc-8004.4486.1: Xcc-8004.4486.1 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 4,294,356 to 4,295,411 Xcc-8004.4486.1 Position (kb) 4293 4294 4295Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4292.860 kb on - strandat 4292.860 kb on - strandat 4292.860 kb on - strandat 4292.860 kb on - strandat 4292.862 kb on - strandat 4292.862 kb on - strandat 4292.862 kb on - strandat 4292.862 kb on - strandat 4293.442 kb on + strandat 4293.442 kb on + strandat 4293.442 kb on + strandat 4293.442 kb on + strandat 4293.443 kb on - strandat 4293.443 kb on - strandat 4293.452 kb on - strandat 4293.452 kb on - strandat 4293.452 kb on - strandat 4293.452 kb on - strandat 4293.452 kb on - strandat 4293.452 kb on - strandat 4293.452 kb on - strandat 4293.629 kb on - strand, within Xcc-8004.4485.1at 4293.673 kb on + strand, within Xcc-8004.4485.1at 4293.674 kb on - strand, within Xcc-8004.4485.1at 4293.757 kb on + strand, within Xcc-8004.4485.1at 4293.757 kb on + strand, within Xcc-8004.4485.1at 4293.758 kb on - strand, within Xcc-8004.4485.1at 4293.758 kb on - strand, within Xcc-8004.4485.1at 4293.758 kb on - strand, within Xcc-8004.4485.1at 4293.758 kb on - strand, within Xcc-8004.4485.1at 4293.763 kb on + strand, within Xcc-8004.4485.1at 4293.763 kb on + strand, within Xcc-8004.4485.1at 4293.763 kb on + strand, within Xcc-8004.4485.1at 4293.763 kb on + strand, within Xcc-8004.4485.1at 4293.764 kb on - strand, within Xcc-8004.4485.1at 4293.764 kb on - strand, within Xcc-8004.4485.1at 4293.764 kb on - strand, within Xcc-8004.4485.1at 4293.764 kb on - strand, within Xcc-8004.4485.1at 4293.781 kb on + strand, within Xcc-8004.4485.1at 4293.781 kb on + strand, within Xcc-8004.4485.1at 4293.782 kb on - strand, within Xcc-8004.4485.1at 4293.782 kb on - strand, within Xcc-8004.4485.1at 4293.782 kb on - strand, within Xcc-8004.4485.1at 4293.856 kb on + strand, within Xcc-8004.4485.1at 4293.856 kb on + strand, within Xcc-8004.4485.1at 4293.856 kb on + strand, within Xcc-8004.4485.1at 4293.957 kb on - strand, within Xcc-8004.4485.1at 4293.970 kb on - strand, within Xcc-8004.4485.1at 4294.054 kb on + strand, within Xcc-8004.4485.1at 4294.055 kb on - strand, within Xcc-8004.4485.1at 4294.177 kb on + strand, within Xcc-8004.4485.1at 4294.180 kb on + strand, within Xcc-8004.4485.1at 4294.180 kb on + strand, within Xcc-8004.4485.1at 4294.180 kb on + strand, within Xcc-8004.4485.1at 4294.180 kb on + strand, within Xcc-8004.4485.1at 4294.181 kb on - strand, within Xcc-8004.4485.1at 4294.181 kb on - strand, within Xcc-8004.4485.1at 4294.181 kb on - strand, within Xcc-8004.4485.1at 4294.240 kb on + strandat 4294.280 kb on + strandat 4294.280 kb on + strandat 4294.280 kb on + strandat 4294.280 kb on + strandat 4294.281 kb on - strandat 4294.299 kb on + strandat 4294.299 kb on + strandat 4294.299 kb on + strandat 4294.299 kb on + strandat 4294.299 kb on + strandat 4294.300 kb on - strandat 4294.300 kb on - strandat 4294.308 kb on - strandat 4294.387 kb on + strandat 4294.387 kb on + strandat 4294.387 kb on + strandat 4294.391 kb on + strandat 4294.391 kb on + strandat 4294.391 kb on + strandat 4294.391 kb on + strandat 4294.391 kb on + strandat 4294.391 kb on + strandat 4294.391 kb on + strandat 4294.391 kb on + strandat 4294.392 kb on - strandat 4294.392 kb on - strandat 4294.392 kb on - strandat 4294.392 kb on - strandat 4294.392 kb on - strandat 4294.392 kb on - strandat 4294.392 kb on - strandat 4294.392 kb on - strandat 4294.433 kb on - strandat 4294.433 kb on - strandat 4294.471 kb on + strand, within Xcc-8004.4486.1at 4294.471 kb on + strand, within Xcc-8004.4486.1at 4294.471 kb on + strand, within Xcc-8004.4486.1at 4294.471 kb on + strand, within Xcc-8004.4486.1at 4294.472 kb on - strand, within Xcc-8004.4486.1at 4294.472 kb on - strand, within Xcc-8004.4486.1at 4294.472 kb on - strand, within Xcc-8004.4486.1at 4294.472 kb on - strand, within Xcc-8004.4486.1at 4294.472 kb on - strand, within Xcc-8004.4486.1at 4294.555 kb on + strand, within Xcc-8004.4486.1at 4294.555 kb on + strand, within Xcc-8004.4486.1at 4294.555 kb on + strand, within Xcc-8004.4486.1at 4294.556 kb on - strand, within Xcc-8004.4486.1at 4294.672 kb on + strand, within Xcc-8004.4486.1at 4294.672 kb on + strand, within Xcc-8004.4486.1at 4294.672 kb on + strand, within Xcc-8004.4486.1at 4294.672 kb on + strand, within Xcc-8004.4486.1at 4294.672 kb on + strand, within Xcc-8004.4486.1at 4294.672 kb on + strand, within Xcc-8004.4486.1at 4294.673 kb on - strand, within Xcc-8004.4486.1at 4294.673 kb on - strand, within Xcc-8004.4486.1at 4294.673 kb on - strand, within Xcc-8004.4486.1at 4294.768 kb on + strand, within Xcc-8004.4486.1at 4294.769 kb on - strand, within Xcc-8004.4486.1at 4294.769 kb on - strand, within Xcc-8004.4486.1at 4294.769 kb on - strand, within Xcc-8004.4486.1at 4294.769 kb on - strand, within Xcc-8004.4486.1at 4294.837 kb on + strand, within Xcc-8004.4486.1at 4294.837 kb on + strand, within Xcc-8004.4486.1at 4294.838 kb on - strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.846 kb on + strand, within Xcc-8004.4486.1at 4294.847 kb on - strand, within Xcc-8004.4486.1at 4294.847 kb on - strand, within Xcc-8004.4486.1at 4294.847 kb on - strand, within Xcc-8004.4486.1at 4294.847 kb on - strand, within Xcc-8004.4486.1at 4294.847 kb on - strand, within Xcc-8004.4486.1at 4294.847 kb on - strand, within Xcc-8004.4486.1at 4294.885 kb on + strand, within Xcc-8004.4486.1at 4294.885 kb on + strand, within Xcc-8004.4486.1at 4294.885 kb on + strand, within Xcc-8004.4486.1at 4294.885 kb on + strand, within Xcc-8004.4486.1at 4294.885 kb on + strand, within Xcc-8004.4486.1at 4294.886 kb on - strand, within Xcc-8004.4486.1at 4294.886 kb on - strand, within Xcc-8004.4486.1at 4294.886 kb on - strand, within Xcc-8004.4486.1at 4294.886 kb on - strand, within Xcc-8004.4486.1at 4294.957 kb on + strand, within Xcc-8004.4486.1at 4294.958 kb on - strand, within Xcc-8004.4486.1at 4295.002 kb on + strand, within Xcc-8004.4486.1at 4295.002 kb on + strand, within Xcc-8004.4486.1at 4295.002 kb on + strand, within Xcc-8004.4486.1at 4295.002 kb on + strand, within Xcc-8004.4486.1at 4295.003 kb on - strand, within Xcc-8004.4486.1at 4295.003 kb on - strand, within Xcc-8004.4486.1at 4295.003 kb on - strand, within Xcc-8004.4486.1at 4295.071 kb on + strand, within Xcc-8004.4486.1at 4295.255 kb on + strand, within Xcc-8004.4486.1at 4295.255 kb on + strand, within Xcc-8004.4486.1at 4295.255 kb on + strand, within Xcc-8004.4486.1at 4295.255 kb on + strand, within Xcc-8004.4486.1at 4295.255 kb on + strand, within Xcc-8004.4486.1at 4295.256 kb on - strand, within Xcc-8004.4486.1at 4295.256 kb on - strand, within Xcc-8004.4486.1at 4295.256 kb on - strand, within Xcc-8004.4486.1at 4295.256 kb on - strand, within Xcc-8004.4486.1at 4295.256 kb on - strand, within Xcc-8004.4486.1at 4295.288 kb on + strand, within Xcc-8004.4486.1at 4295.289 kb on - strand, within Xcc-8004.4486.1at 4295.289 kb on - strand, within Xcc-8004.4486.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,292,860 - -0.4
4,292,860 - +1.4
4,292,860 - -1.9
4,292,860 - +0.9
4,292,862 - +0.4
4,292,862 - +0.4
4,292,862 - -1.4
4,292,862 - +0.7
4,293,442 + -1.7
4,293,442 + -1.8
4,293,442 + -2.5
4,293,442 + -0.5
4,293,443 - -1.8
4,293,443 - -1.7
4,293,452 - -0.8
4,293,452 - -1.6
4,293,452 - -3.2
4,293,452 - -2.7
4,293,452 - -0.4
4,293,452 - -1.2
4,293,452 - -0.3
4,293,629 - Xcc-8004.4485.1 0.25 -2.0
4,293,673 + Xcc-8004.4485.1 0.30 -1.0
4,293,674 - Xcc-8004.4485.1 0.30 -2.8
4,293,757 + Xcc-8004.4485.1 0.40 -1.4
4,293,757 + Xcc-8004.4485.1 0.40 -2.1
4,293,758 - Xcc-8004.4485.1 0.40 -0.9
4,293,758 - Xcc-8004.4485.1 0.40 -0.8
4,293,758 - Xcc-8004.4485.1 0.40 +0.8
4,293,758 - Xcc-8004.4485.1 0.40 -0.7
4,293,763 + Xcc-8004.4485.1 0.40 -1.1
4,293,763 + Xcc-8004.4485.1 0.40 -1.5
4,293,763 + Xcc-8004.4485.1 0.40 -2.2
4,293,763 + Xcc-8004.4485.1 0.40 +0.2
4,293,764 - Xcc-8004.4485.1 0.40 +1.1
4,293,764 - Xcc-8004.4485.1 0.40 +0.5
4,293,764 - Xcc-8004.4485.1 0.40 -1.9
4,293,764 - Xcc-8004.4485.1 0.40 -0.7
4,293,781 + Xcc-8004.4485.1 0.42 -1.0
4,293,781 + Xcc-8004.4485.1 0.42 -1.1
4,293,782 - Xcc-8004.4485.1 0.42 -1.3
4,293,782 - Xcc-8004.4485.1 0.42 -1.9
4,293,782 - Xcc-8004.4485.1 0.42 -0.5
4,293,856 + Xcc-8004.4485.1 0.51 -2.5
4,293,856 + Xcc-8004.4485.1 0.51 -1.4
4,293,856 + Xcc-8004.4485.1 0.51 -2.0
4,293,957 - Xcc-8004.4485.1 0.62 +0.5
4,293,970 - Xcc-8004.4485.1 0.64 +0.4
4,294,054 + Xcc-8004.4485.1 0.73 -2.9
4,294,055 - Xcc-8004.4485.1 0.73 -1.4
4,294,177 + Xcc-8004.4485.1 0.87 -2.8
4,294,180 + Xcc-8004.4485.1 0.87 -3.1
4,294,180 + Xcc-8004.4485.1 0.87 -0.5
4,294,180 + Xcc-8004.4485.1 0.87 -2.8
4,294,180 + Xcc-8004.4485.1 0.87 +0.1
4,294,181 - Xcc-8004.4485.1 0.87 -0.6
4,294,181 - Xcc-8004.4485.1 0.87 +0.3
4,294,181 - Xcc-8004.4485.1 0.87 -1.1
4,294,240 + -1.6
4,294,280 + -0.8
4,294,280 + -2.8
4,294,280 + -0.9
4,294,280 + -1.7
4,294,281 - -1.8
4,294,299 + -1.7
4,294,299 + -3.1
4,294,299 + -0.9
4,294,299 + -1.6
4,294,299 + -1.4
4,294,300 - +0.3
4,294,300 - +2.4
4,294,308 - +1.1
4,294,387 + -0.1
4,294,387 + +0.1
4,294,387 + -0.4
4,294,391 + -0.9
4,294,391 + -0.5
4,294,391 + -0.6
4,294,391 + -0.4
4,294,391 + -0.2
4,294,391 + -1.6
4,294,391 + -0.5
4,294,391 + -1.6
4,294,392 - -0.6
4,294,392 - -0.4
4,294,392 - -0.0
4,294,392 - -0.7
4,294,392 - +1.0
4,294,392 - -0.5
4,294,392 - -0.7
4,294,392 - +0.3
4,294,433 - -2.3
4,294,433 - -1.8
4,294,471 + Xcc-8004.4486.1 0.11 -0.5
4,294,471 + Xcc-8004.4486.1 0.11 -1.1
4,294,471 + Xcc-8004.4486.1 0.11 -0.8
4,294,471 + Xcc-8004.4486.1 0.11 -1.1
4,294,472 - Xcc-8004.4486.1 0.11 -0.6
4,294,472 - Xcc-8004.4486.1 0.11 -1.3
4,294,472 - Xcc-8004.4486.1 0.11 -2.3
4,294,472 - Xcc-8004.4486.1 0.11 -1.0
4,294,472 - Xcc-8004.4486.1 0.11 -1.4
4,294,555 + Xcc-8004.4486.1 0.19 -1.1
4,294,555 + Xcc-8004.4486.1 0.19 -1.7
4,294,555 + Xcc-8004.4486.1 0.19 +0.8
4,294,556 - Xcc-8004.4486.1 0.19 -1.5
4,294,672 + Xcc-8004.4486.1 0.30 -2.4
4,294,672 + Xcc-8004.4486.1 0.30 -2.8
4,294,672 + Xcc-8004.4486.1 0.30 -2.6
4,294,672 + Xcc-8004.4486.1 0.30 -1.6
4,294,672 + Xcc-8004.4486.1 0.30 -1.5
4,294,672 + Xcc-8004.4486.1 0.30 -0.2
4,294,673 - Xcc-8004.4486.1 0.30 -1.9
4,294,673 - Xcc-8004.4486.1 0.30 +0.1
4,294,673 - Xcc-8004.4486.1 0.30 -1.0
4,294,768 + Xcc-8004.4486.1 0.39 -0.9
4,294,769 - Xcc-8004.4486.1 0.39 -1.4
4,294,769 - Xcc-8004.4486.1 0.39 -0.5
4,294,769 - Xcc-8004.4486.1 0.39 -2.3
4,294,769 - Xcc-8004.4486.1 0.39 -2.2
4,294,837 + Xcc-8004.4486.1 0.46 -1.5
4,294,837 + Xcc-8004.4486.1 0.46 -1.6
4,294,838 - Xcc-8004.4486.1 0.46 -0.0
4,294,846 + Xcc-8004.4486.1 0.46 -3.7
4,294,846 + Xcc-8004.4486.1 0.46 -0.7
4,294,846 + Xcc-8004.4486.1 0.46 -0.1
4,294,846 + Xcc-8004.4486.1 0.46 -0.9
4,294,846 + Xcc-8004.4486.1 0.46 -1.6
4,294,846 + Xcc-8004.4486.1 0.46 -0.3
4,294,846 + Xcc-8004.4486.1 0.46 -1.3
4,294,846 + Xcc-8004.4486.1 0.46 -0.9
4,294,846 + Xcc-8004.4486.1 0.46 -2.1
4,294,846 + Xcc-8004.4486.1 0.46 -1.1
4,294,846 + Xcc-8004.4486.1 0.46 -2.3
4,294,846 + Xcc-8004.4486.1 0.46 -0.0
4,294,846 + Xcc-8004.4486.1 0.46 -2.6
4,294,847 - Xcc-8004.4486.1 0.46 -2.2
4,294,847 - Xcc-8004.4486.1 0.46 -0.4
4,294,847 - Xcc-8004.4486.1 0.46 -1.8
4,294,847 - Xcc-8004.4486.1 0.46 -0.3
4,294,847 - Xcc-8004.4486.1 0.46 -1.0
4,294,847 - Xcc-8004.4486.1 0.46 -1.1
4,294,885 + Xcc-8004.4486.1 0.50 -1.2
4,294,885 + Xcc-8004.4486.1 0.50 +0.1
4,294,885 + Xcc-8004.4486.1 0.50 -1.4
4,294,885 + Xcc-8004.4486.1 0.50 -2.5
4,294,885 + Xcc-8004.4486.1 0.50 -1.0
4,294,886 - Xcc-8004.4486.1 0.50 +0.1
4,294,886 - Xcc-8004.4486.1 0.50 -1.7
4,294,886 - Xcc-8004.4486.1 0.50 -0.2
4,294,886 - Xcc-8004.4486.1 0.50 -0.6
4,294,957 + Xcc-8004.4486.1 0.57 -2.3
4,294,958 - Xcc-8004.4486.1 0.57 +0.2
4,295,002 + Xcc-8004.4486.1 0.61 -1.1
4,295,002 + Xcc-8004.4486.1 0.61 -1.1
4,295,002 + Xcc-8004.4486.1 0.61 -0.1
4,295,002 + Xcc-8004.4486.1 0.61 -1.3
4,295,003 - Xcc-8004.4486.1 0.61 +0.2
4,295,003 - Xcc-8004.4486.1 0.61 -0.2
4,295,003 - Xcc-8004.4486.1 0.61 -1.7
4,295,071 + Xcc-8004.4486.1 0.68 -0.6
4,295,255 + Xcc-8004.4486.1 0.85 -2.2
4,295,255 + Xcc-8004.4486.1 0.85 -1.2
4,295,255 + Xcc-8004.4486.1 0.85 -1.8
4,295,255 + Xcc-8004.4486.1 0.85 -1.0
4,295,255 + Xcc-8004.4486.1 0.85 +0.1
4,295,256 - Xcc-8004.4486.1 0.85 -2.1
4,295,256 - Xcc-8004.4486.1 0.85 -1.9
4,295,256 - Xcc-8004.4486.1 0.85 -1.0
4,295,256 - Xcc-8004.4486.1 0.85 +0.0
4,295,256 - Xcc-8004.4486.1 0.85 +0.3
4,295,288 + Xcc-8004.4486.1 0.88 -1.3
4,295,289 - Xcc-8004.4486.1 0.88 -0.8
4,295,289 - Xcc-8004.4486.1 0.88 -0.6

Or see this region's nucleotide sequence