Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4266.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,084,781	-		Xcc-8004.4265.1	0.23	+0.3
4,084,800	+		Xcc-8004.4265.1	0.25	+0.7
4,084,800	+		Xcc-8004.4265.1	0.25	+0.7
4,084,801	-		Xcc-8004.4265.1	0.25	-0.0
4,084,801	-		Xcc-8004.4265.1	0.25	-0.9
4,085,022	+		Xcc-8004.4265.1	0.50	+0.5
4,085,022	+		Xcc-8004.4265.1	0.50	+0.4
4,085,022	+		Xcc-8004.4265.1	0.50	+0.8
4,085,023	-		Xcc-8004.4265.1	0.50	-0.3
4,085,023	-		Xcc-8004.4265.1	0.50	+1.3
4,085,023	-		Xcc-8004.4265.1	0.50	+0.2
4,085,023	-		Xcc-8004.4265.1	0.50	-0.1
4,085,095	+		Xcc-8004.4265.1	0.58	+0.7
4,085,095	+		Xcc-8004.4265.1	0.58	+0.4
4,085,095	+		Xcc-8004.4265.1	0.58	+0.2
4,085,096	-		Xcc-8004.4265.1	0.58	+0.6
4,085,096	-		Xcc-8004.4265.1	0.58	-1.5
4,085,096	-		Xcc-8004.4265.1	0.58	+0.1
4,085,122	+		Xcc-8004.4265.1	0.61	-1.0
4,085,399	+				+0.3
4,085,399	+				+0.5
4,085,420	-				+0.5
4,085,554	+				-0.1
4,085,554	+				+0.2
4,085,554	+				+1.0
4,085,554	+				-0.0
4,085,554	+				+0.9
4,085,563	+				+0.2
4,085,563	+				+0.1
4,085,564	-				-0.7
4,085,564	-				+0.1
4,085,565	+				-0.4
4,085,565	+				+0.1
4,085,575	+				-0.8
4,085,575	+				-0.7
4,085,575	+				+0.2
4,085,587	+				-0.0
4,085,587	+				-0.2
4,087,942	+				-0.9
4,087,942	+				+0.0
4,087,942	+				-0.1
4,087,952	+				+0.5
4,088,012	+				-0.7