Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4265.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,083,622	+		Xcc-8004.4263.1	0.40	+0.0
4,083,622	+		Xcc-8004.4263.1	0.40	+0.2
4,083,622	+		Xcc-8004.4263.1	0.40	+0.3
4,083,622	+		Xcc-8004.4263.1	0.40	-0.3
4,083,622	+		Xcc-8004.4263.1	0.40	+0.1
4,083,622	+		Xcc-8004.4263.1	0.40	+0.3
4,083,622	+		Xcc-8004.4263.1	0.40	+0.5
4,083,622	+		Xcc-8004.4263.1	0.40	+0.1
4,083,623	-		Xcc-8004.4263.1	0.40	+1.0
4,083,623	-		Xcc-8004.4263.1	0.40	+0.4
4,083,623	-		Xcc-8004.4263.1	0.40	+0.5
4,083,623	-		Xcc-8004.4263.1	0.40	-1.9
4,083,623	-		Xcc-8004.4263.1	0.40	+0.4
4,083,640	+		Xcc-8004.4263.1	0.43	-1.0
4,083,641	-		Xcc-8004.4263.1	0.43	+0.4
4,083,661	+		Xcc-8004.4263.1	0.47	+0.2
4,083,661	+		Xcc-8004.4263.1	0.47	-2.4
4,083,662	-		Xcc-8004.4263.1	0.47	+0.2
4,083,662	-		Xcc-8004.4263.1	0.47	+0.8
4,083,704	-		Xcc-8004.4263.1	0.54	-0.9
4,083,704	-		Xcc-8004.4263.1	0.54	+0.5
4,083,796	+		Xcc-8004.4263.1	0.70	-0.3
4,083,796	+		Xcc-8004.4263.1	0.70	-0.4
4,083,797	-		Xcc-8004.4263.1	0.70	-0.6
4,083,797	-		Xcc-8004.4263.1	0.70	+0.8
4,083,797	-		Xcc-8004.4263.1	0.70	-0.2
4,083,797	-		Xcc-8004.4263.1	0.70	-0.0
4,083,797	-		Xcc-8004.4263.1	0.70	+1.0
4,083,797	-		Xcc-8004.4263.1	0.70	+0.6
4,083,850	+		Xcc-8004.4263.1	0.79	-0.5
4,083,850	+		Xcc-8004.4263.1	0.79	+0.4
4,083,851	-		Xcc-8004.4263.1	0.79	+0.0
4,083,871	+		Xcc-8004.4263.1	0.83	-0.7
4,083,871	+		Xcc-8004.4263.1	0.83	-0.2
4,083,871	+		Xcc-8004.4263.1	0.83	-1.2
4,083,871	+		Xcc-8004.4263.1	0.83	-1.1
4,083,872	-		Xcc-8004.4263.1	0.83	-0.2
4,083,892	+		Xcc-8004.4263.1	0.87	+0.1
4,083,892	+		Xcc-8004.4263.1	0.87	-0.4
4,083,892	+		Xcc-8004.4263.1	0.87	-0.5
4,083,892	+		Xcc-8004.4263.1	0.87	+0.2
4,083,892	+		Xcc-8004.4263.1	0.87	-0.1
4,083,892	+		Xcc-8004.4263.1	0.87	-0.6
4,083,892	+		Xcc-8004.4263.1	0.87	+0.8
4,083,893	-		Xcc-8004.4263.1	0.87	+0.9
4,083,893	-		Xcc-8004.4263.1	0.87	-1.1
4,083,893	-		Xcc-8004.4263.1	0.87	-0.4
4,083,893	-		Xcc-8004.4263.1	0.87	-0.4
4,083,995	+				-1.2
4,083,995	+				-0.4
4,083,995	+				+0.0
4,083,995	+				+0.9
4,083,995	+				+0.1
4,083,995	+				+0.5
4,083,995	+				-0.9
4,083,995	+				-0.6
4,083,995	+				-0.6
4,083,995	+				-0.1
4,083,995	+				-0.4
4,083,995	+				+0.4
4,083,996	-				+0.2
4,083,996	-				+0.1
4,083,996	-				-0.2
4,083,996	-				-0.5
4,083,996	-				-0.2
4,083,996	-				-1.4
4,083,996	-				+0.5
4,083,996	-				-0.7
4,083,996	-				-1.4
4,083,996	-				-0.6
4,083,996	-				-0.5
4,083,997	+				-0.6
4,083,997	+				+0.5
4,083,997	+				-0.5
4,083,997	+				-1.4
4,083,998	-				+0.1
4,083,998	-				-1.7
4,083,998	-				-0.7
4,083,998	-				+0.5
4,084,021	+				-0.7
4,084,039	+		Xcc-8004.4264.1	0.12	+0.9
4,084,040	-		Xcc-8004.4264.1	0.12	-1.0
4,084,040	-		Xcc-8004.4264.1	0.12	+1.2
4,084,076	+		Xcc-8004.4264.1	0.19	+1.0
4,084,555	+				-1.5
4,084,555	+				+1.4
4,084,555	+				+0.2
4,084,555	+				-2.3
4,084,555	+				-0.3
4,084,555	+				-1.7
4,084,555	+				+0.8
4,084,555	+				-1.4
4,084,555	+				+0.5
4,084,556	-				+0.2
4,084,556	-				-0.2
4,084,556	-				+1.0
4,084,556	-				+0.5
4,084,556	-				-1.0
4,084,556	-				-0.8
4,084,781	-		Xcc-8004.4265.1	0.23	+0.3
4,084,800	+		Xcc-8004.4265.1	0.25	+0.7
4,084,800	+		Xcc-8004.4265.1	0.25	+0.7
4,084,801	-		Xcc-8004.4265.1	0.25	-0.0
4,084,801	-		Xcc-8004.4265.1	0.25	-0.9
4,085,022	+		Xcc-8004.4265.1	0.50	+0.5
4,085,022	+		Xcc-8004.4265.1	0.50	+0.4
4,085,022	+		Xcc-8004.4265.1	0.50	+0.8
4,085,023	-		Xcc-8004.4265.1	0.50	-0.3
4,085,023	-		Xcc-8004.4265.1	0.50	+1.3
4,085,023	-		Xcc-8004.4265.1	0.50	+0.2
4,085,023	-		Xcc-8004.4265.1	0.50	-0.1
4,085,095	+		Xcc-8004.4265.1	0.58	+0.7
4,085,095	+		Xcc-8004.4265.1	0.58	+0.4
4,085,095	+		Xcc-8004.4265.1	0.58	+0.2
4,085,096	-		Xcc-8004.4265.1	0.58	+0.6
4,085,096	-		Xcc-8004.4265.1	0.58	-1.5
4,085,096	-		Xcc-8004.4265.1	0.58	+0.1
4,085,122	+		Xcc-8004.4265.1	0.61	-1.0
4,085,399	+				+0.3
4,085,399	+				+0.5
4,085,420	-				+0.5
4,085,554	+				-0.1
4,085,554	+				+0.2
4,085,554	+				+1.0
4,085,554	+				-0.0
4,085,554	+				+0.9
4,085,563	+				+0.2
4,085,563	+				+0.1
4,085,564	-				-0.7
4,085,564	-				+0.1
4,085,565	+				-0.4
4,085,565	+				+0.1
4,085,575	+				-0.8
4,085,575	+				-0.7
4,085,575	+				+0.2
4,085,587	+				-0.0
4,085,587	+				-0.2