Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4261.1 and Xcc-8004.4262.1 overlap by 4 nucleotides Xcc-8004.4262.1 and Xcc-8004.4263.1 are separated by 106 nucleotides Xcc-8004.4263.1 and Xcc-8004.4264.1 are separated by 1 nucleotides
Xcc-8004.4261.1: Xcc-8004.4261.1 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 4,080,811 to 4,081,992
Xcc-8004.4261.1
Xcc-8004.4262.1: Xcc-8004.4262.1 - 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-), at 4,081,989 to 4,083,284
Xcc-8004.4262.1
Xcc-8004.4263.1: Xcc-8004.4263.1 - Optional hypothetical component of the B12 transporter BtuM, at 4,083,391 to 4,083,969
Xcc-8004.4263.1
Xcc-8004.4264.1: Xcc-8004.4264.1 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 4,083,971 to 4,084,528
Xcc-8004.4264.1
Position (kb) 4081
4082
4083
4084 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.289 kb on + strand at 4083.290 kb on - strand at 4083.290 kb on - strand at 4083.355 kb on + strand at 4083.356 kb on - strand at 4083.356 kb on - strand at 4083.371 kb on + strand at 4083.372 kb on - strand at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.640 kb on + strand, within Xcc-8004.4263.1 at 4083.641 kb on - strand, within Xcc-8004.4263.1 at 4083.661 kb on + strand, within Xcc-8004.4263.1 at 4083.661 kb on + strand, within Xcc-8004.4263.1 at 4083.662 kb on - strand, within Xcc-8004.4263.1 at 4083.662 kb on - strand, within Xcc-8004.4263.1 at 4083.704 kb on - strand, within Xcc-8004.4263.1 at 4083.704 kb on - strand, within Xcc-8004.4263.1 at 4083.796 kb on + strand, within Xcc-8004.4263.1 at 4083.796 kb on + strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.850 kb on + strand, within Xcc-8004.4263.1 at 4083.850 kb on + strand, within Xcc-8004.4263.1 at 4083.851 kb on - strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.872 kb on - strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.997 kb on + strand at 4083.997 kb on + strand at 4083.997 kb on + strand at 4083.997 kb on + strand at 4083.998 kb on - strand at 4083.998 kb on - strand at 4083.998 kb on - strand at 4083.998 kb on - strand at 4084.021 kb on + strand at 4084.039 kb on + strand, within Xcc-8004.4264.1 at 4084.040 kb on - strand, within Xcc-8004.4264.1 at 4084.040 kb on - strand, within Xcc-8004.4264.1 at 4084.076 kb on + strand, within Xcc-8004.4264.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,083,186 + +0.1 4,083,186 + -1.1 4,083,186 + +0.2 4,083,186 + +0.2 4,083,186 + +0.1 4,083,186 + -2.0 4,083,186 + -0.2 4,083,186 + +1.1 4,083,186 + +1.2 4,083,186 + -0.0 4,083,186 + -1.6 4,083,186 + +1.3 4,083,186 + +0.4 4,083,186 + +0.6 4,083,186 + +0.7 4,083,186 + -0.7 4,083,186 + +1.4 4,083,186 + -0.9 4,083,186 + +0.2 4,083,186 + +0.9 4,083,186 + +0.3 4,083,186 + +1.1 4,083,186 + -0.1 4,083,187 - -0.9 4,083,187 - +0.2 4,083,187 - +0.9 4,083,187 - +0.6 4,083,187 - +1.6 4,083,187 - +0.8 4,083,187 - +0.4 4,083,187 - +0.4 4,083,187 - -1.1 4,083,187 - -0.5 4,083,187 - +0.0 4,083,187 - -0.7 4,083,187 - +0.1 4,083,208 + -0.4 4,083,208 + +0.3 4,083,208 + +0.3 4,083,208 + +0.5 4,083,208 + -2.0 4,083,208 + +0.8 4,083,208 + -0.4 4,083,209 - +0.9 4,083,209 - -2.8 4,083,209 - -0.8 4,083,209 - -1.5 4,083,209 - +0.6 4,083,209 - -1.1 4,083,209 - +0.2 4,083,289 + +0.6 4,083,290 - -1.6 4,083,290 - -0.1 4,083,355 + +0.7 4,083,356 - -1.1 4,083,356 - -0.2 4,083,371 + +0.2 4,083,372 - -1.2 4,083,622 + Xcc-8004.4263.1 0.40 +0.0 4,083,622 + Xcc-8004.4263.1 0.40 +0.2 4,083,622 + Xcc-8004.4263.1 0.40 +0.3 4,083,622 + Xcc-8004.4263.1 0.40 -0.3 4,083,622 + Xcc-8004.4263.1 0.40 +0.1 4,083,622 + Xcc-8004.4263.1 0.40 +0.3 4,083,622 + Xcc-8004.4263.1 0.40 +0.5 4,083,622 + Xcc-8004.4263.1 0.40 +0.1 4,083,623 - Xcc-8004.4263.1 0.40 +1.0 4,083,623 - Xcc-8004.4263.1 0.40 +0.4 4,083,623 - Xcc-8004.4263.1 0.40 +0.5 4,083,623 - Xcc-8004.4263.1 0.40 -1.9 4,083,623 - Xcc-8004.4263.1 0.40 +0.4 4,083,640 + Xcc-8004.4263.1 0.43 -1.0 4,083,641 - Xcc-8004.4263.1 0.43 +0.4 4,083,661 + Xcc-8004.4263.1 0.47 +0.2 4,083,661 + Xcc-8004.4263.1 0.47 -2.4 4,083,662 - Xcc-8004.4263.1 0.47 +0.2 4,083,662 - Xcc-8004.4263.1 0.47 +0.8 4,083,704 - Xcc-8004.4263.1 0.54 -0.9 4,083,704 - Xcc-8004.4263.1 0.54 +0.5 4,083,796 + Xcc-8004.4263.1 0.70 -0.3 4,083,796 + Xcc-8004.4263.1 0.70 -0.4 4,083,797 - Xcc-8004.4263.1 0.70 -0.6 4,083,797 - Xcc-8004.4263.1 0.70 +0.8 4,083,797 - Xcc-8004.4263.1 0.70 -0.2 4,083,797 - Xcc-8004.4263.1 0.70 -0.0 4,083,797 - Xcc-8004.4263.1 0.70 +1.0 4,083,797 - Xcc-8004.4263.1 0.70 +0.6 4,083,850 + Xcc-8004.4263.1 0.79 -0.5 4,083,850 + Xcc-8004.4263.1 0.79 +0.4 4,083,851 - Xcc-8004.4263.1 0.79 +0.0 4,083,871 + Xcc-8004.4263.1 0.83 -0.7 4,083,871 + Xcc-8004.4263.1 0.83 -0.2 4,083,871 + Xcc-8004.4263.1 0.83 -1.2 4,083,871 + Xcc-8004.4263.1 0.83 -1.1 4,083,872 - Xcc-8004.4263.1 0.83 -0.2 4,083,892 + Xcc-8004.4263.1 0.87 +0.1 4,083,892 + Xcc-8004.4263.1 0.87 -0.4 4,083,892 + Xcc-8004.4263.1 0.87 -0.5 4,083,892 + Xcc-8004.4263.1 0.87 +0.2 4,083,892 + Xcc-8004.4263.1 0.87 -0.1 4,083,892 + Xcc-8004.4263.1 0.87 -0.6 4,083,892 + Xcc-8004.4263.1 0.87 +0.8 4,083,893 - Xcc-8004.4263.1 0.87 +0.9 4,083,893 - Xcc-8004.4263.1 0.87 -1.1 4,083,893 - Xcc-8004.4263.1 0.87 -0.4 4,083,893 - Xcc-8004.4263.1 0.87 -0.4 4,083,995 + -1.2 4,083,995 + -0.4 4,083,995 + +0.0 4,083,995 + +0.9 4,083,995 + +0.1 4,083,995 + +0.5 4,083,995 + -0.9 4,083,995 + -0.6 4,083,995 + -0.6 4,083,995 + -0.1 4,083,995 + -0.4 4,083,995 + +0.4 4,083,996 - +0.2 4,083,996 - +0.1 4,083,996 - -0.2 4,083,996 - -0.5 4,083,996 - -0.2 4,083,996 - -1.4 4,083,996 - +0.5 4,083,996 - -0.7 4,083,996 - -1.4 4,083,996 - -0.6 4,083,996 - -0.5 4,083,997 + -0.6 4,083,997 + +0.5 4,083,997 + -0.5 4,083,997 + -1.4 4,083,998 - +0.1 4,083,998 - -1.7 4,083,998 - -0.7 4,083,998 - +0.5 4,084,021 + -0.7 4,084,039 + Xcc-8004.4264.1 0.12 +0.9 4,084,040 - Xcc-8004.4264.1 0.12 -1.0 4,084,040 - Xcc-8004.4264.1 0.12 +1.2 4,084,076 + Xcc-8004.4264.1 0.19 +1.0
Or see this region's nucleotide sequence