Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4253.1 and Xcc-8004.4254.1 are separated by 72 nucleotides Xcc-8004.4254.1 and Xcc-8004.4255.1 are separated by 9 nucleotides Xcc-8004.4255.1 and Xcc-8004.4256.1 are separated by 56 nucleotides
Xcc-8004.4253.1: Xcc-8004.4253.1 - Transcriptional regulator, LysR family, at 4,074,875 to 4,075,876
Xcc-8004.4253.1
Xcc-8004.4254.1: Xcc-8004.4254.1 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 4,075,949 to 4,076,308
Xcc-8004.4254.1
Xcc-8004.4255.1: Xcc-8004.4255.1 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 4,076,318 to 4,077,217
Xcc-8004.4255.1
Xcc-8004.4256.1: Xcc-8004.4256.1 - Transcriptional regulator for ferulate or vanillate catabolism, at 4,077,274 to 4,078,128
Xcc-8004.4256.1
Position (kb) 4076
4077
4078 Strain fitness (log2 ratio) -1
0
1
2 at 4075.603 kb on + strand, within Xcc-8004.4253.1 at 4076.016 kb on + strand, within Xcc-8004.4254.1 at 4076.083 kb on - strand, within Xcc-8004.4254.1 at 4076.265 kb on + strand, within Xcc-8004.4254.1 at 4076.265 kb on + strand, within Xcc-8004.4254.1 at 4076.266 kb on - strand, within Xcc-8004.4254.1 at 4076.433 kb on + strand, within Xcc-8004.4255.1 at 4076.529 kb on + strand, within Xcc-8004.4255.1 at 4076.530 kb on - strand, within Xcc-8004.4255.1 at 4076.536 kb on + strand, within Xcc-8004.4255.1 at 4076.867 kb on + strand, within Xcc-8004.4255.1 at 4077.015 kb on + strand, within Xcc-8004.4255.1 at 4077.052 kb on - strand, within Xcc-8004.4255.1 at 4077.052 kb on - strand, within Xcc-8004.4255.1 at 4077.108 kb on + strand, within Xcc-8004.4255.1 at 4077.159 kb on + strand at 4077.160 kb on - strand at 4077.160 kb on - strand at 4077.160 kb on - strand at 4077.160 kb on - strand at 4077.441 kb on + strand, within Xcc-8004.4256.1 at 4077.501 kb on - strand, within Xcc-8004.4256.1 at 4077.501 kb on - strand, within Xcc-8004.4256.1 at 4077.723 kb on + strand, within Xcc-8004.4256.1 at 4078.012 kb on + strand, within Xcc-8004.4256.1 at 4078.012 kb on + strand, within Xcc-8004.4256.1 at 4078.079 kb on + strand at 4078.079 kb on + strand at 4078.080 kb on - strand at 4078.080 kb on - strand at 4078.080 kb on - strand at 4078.126 kb on + strand at 4078.126 kb on + strand at 4078.126 kb on + strand at 4078.126 kb on + strand at 4078.127 kb on - strand at 4078.127 kb on - strand at 4078.127 kb on - strand at 4078.127 kb on - strand at 4078.127 kb on - strand at 4078.127 kb on - strand at 4078.127 kb on - strand at 4078.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,075,603 + Xcc-8004.4253.1 0.73 -0.5 4,076,016 + Xcc-8004.4254.1 0.19 +0.1 4,076,083 - Xcc-8004.4254.1 0.37 +1.6 4,076,265 + Xcc-8004.4254.1 0.88 +0.1 4,076,265 + Xcc-8004.4254.1 0.88 -1.3 4,076,266 - Xcc-8004.4254.1 0.88 -1.5 4,076,433 + Xcc-8004.4255.1 0.13 +0.0 4,076,529 + Xcc-8004.4255.1 0.23 -0.2 4,076,530 - Xcc-8004.4255.1 0.24 -1.3 4,076,536 + Xcc-8004.4255.1 0.24 +0.0 4,076,867 + Xcc-8004.4255.1 0.61 +0.3 4,077,015 + Xcc-8004.4255.1 0.77 -1.5 4,077,052 - Xcc-8004.4255.1 0.82 -1.4 4,077,052 - Xcc-8004.4255.1 0.82 -1.2 4,077,108 + Xcc-8004.4255.1 0.88 -0.1 4,077,159 + -0.1 4,077,160 - -0.5 4,077,160 - +0.5 4,077,160 - +0.2 4,077,160 - -1.3 4,077,441 + Xcc-8004.4256.1 0.20 +0.2 4,077,501 - Xcc-8004.4256.1 0.27 -0.5 4,077,501 - Xcc-8004.4256.1 0.27 +0.8 4,077,723 + Xcc-8004.4256.1 0.53 +0.1 4,078,012 + Xcc-8004.4256.1 0.86 -0.4 4,078,012 + Xcc-8004.4256.1 0.86 +2.1 4,078,079 + +1.4 4,078,079 + +0.1 4,078,080 - -1.4 4,078,080 - +2.1 4,078,080 - +0.3 4,078,126 + -1.6 4,078,126 + +0.9 4,078,126 + -0.1 4,078,126 + +0.2 4,078,127 - -0.4 4,078,127 - -0.2 4,078,127 - -0.2 4,078,127 - -0.3 4,078,127 - +0.3 4,078,127 - -0.9 4,078,127 - -0.3 4,078,127 - +0.7
Or see this region's nucleotide sequence