Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3895.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3894.1 and Xcc-8004.3895.1 are separated by 254 nucleotidesXcc-8004.3895.1 and Xcc-8004.3896.1 are separated by 298 nucleotides Xcc-8004.3894.1: Xcc-8004.3894.1 - putative; ORF located using Glimmer/Genemark, at 3,762,718 to 3,763,215 Xcc-8004.3894.1 Xcc-8004.3895.1: Xcc-8004.3895.1 - hypothetical protein, at 3,763,470 to 3,766,718 Xcc-8004.3895.1 Xcc-8004.3896.1: Xcc-8004.3896.1 - hypothetical protein, at 3,767,017 to 3,768,435 Xcc-8004.3896.1 Position (kb) 3763 3764 3765 3766 3767Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3762.514 kb on - strandat 3762.595 kb on + strandat 3762.595 kb on + strandat 3762.595 kb on + strandat 3762.596 kb on - strandat 3762.596 kb on - strandat 3762.596 kb on - strandat 3762.617 kb on + strandat 3762.617 kb on + strandat 3762.740 kb on + strandat 3762.740 kb on + strandat 3762.740 kb on + strandat 3762.741 kb on - strandat 3762.741 kb on - strandat 3762.741 kb on - strandat 3762.915 kb on - strand, within Xcc-8004.3894.1at 3762.958 kb on + strand, within Xcc-8004.3894.1at 3762.958 kb on + strand, within Xcc-8004.3894.1at 3762.958 kb on + strand, within Xcc-8004.3894.1at 3762.959 kb on - strand, within Xcc-8004.3894.1at 3762.962 kb on - strand, within Xcc-8004.3894.1at 3763.015 kb on + strand, within Xcc-8004.3894.1at 3763.016 kb on - strand, within Xcc-8004.3894.1at 3763.051 kb on + strand, within Xcc-8004.3894.1at 3763.115 kb on - strand, within Xcc-8004.3894.1at 3763.159 kb on + strand, within Xcc-8004.3894.1at 3763.160 kb on - strand, within Xcc-8004.3894.1at 3763.160 kb on - strand, within Xcc-8004.3894.1at 3763.160 kb on - strand, within Xcc-8004.3894.1at 3763.227 kb on - strandat 3763.267 kb on + strandat 3763.267 kb on + strandat 3763.268 kb on - strandat 3763.373 kb on + strandat 3763.373 kb on + strandat 3763.373 kb on + strandat 3763.525 kb on + strandat 3763.526 kb on - strandat 3764.323 kb on + strand, within Xcc-8004.3895.1at 3764.323 kb on + strand, within Xcc-8004.3895.1at 3764.323 kb on + strand, within Xcc-8004.3895.1at 3764.324 kb on - strand, within Xcc-8004.3895.1at 3764.324 kb on - strand, within Xcc-8004.3895.1at 3764.324 kb on - strand, within Xcc-8004.3895.1at 3764.324 kb on - strand, within Xcc-8004.3895.1at 3764.350 kb on - strand, within Xcc-8004.3895.1at 3764.401 kb on + strand, within Xcc-8004.3895.1at 3764.401 kb on + strand, within Xcc-8004.3895.1at 3764.402 kb on - strand, within Xcc-8004.3895.1at 3764.533 kb on - strand, within Xcc-8004.3895.1at 3764.611 kb on + strand, within Xcc-8004.3895.1at 3764.612 kb on - strand, within Xcc-8004.3895.1at 3764.612 kb on - strand, within Xcc-8004.3895.1at 3764.720 kb on - strand, within Xcc-8004.3895.1at 3764.806 kb on + strand, within Xcc-8004.3895.1at 3764.807 kb on - strand, within Xcc-8004.3895.1at 3764.807 kb on - strand, within Xcc-8004.3895.1at 3764.903 kb on - strand, within Xcc-8004.3895.1at 3764.903 kb on - strand, within Xcc-8004.3895.1at 3764.941 kb on + strand, within Xcc-8004.3895.1at 3765.144 kb on + strand, within Xcc-8004.3895.1at 3765.145 kb on - strand, within Xcc-8004.3895.1at 3765.416 kb on - strand, within Xcc-8004.3895.1at 3765.421 kb on + strand, within Xcc-8004.3895.1at 3765.421 kb on + strand, within Xcc-8004.3895.1at 3765.421 kb on + strand, within Xcc-8004.3895.1at 3765.421 kb on + strand, within Xcc-8004.3895.1at 3765.422 kb on - strand, within Xcc-8004.3895.1at 3765.422 kb on - strand, within Xcc-8004.3895.1at 3765.422 kb on - strand, within Xcc-8004.3895.1at 3765.556 kb on + strand, within Xcc-8004.3895.1at 3765.658 kb on + strand, within Xcc-8004.3895.1at 3765.659 kb on - strand, within Xcc-8004.3895.1at 3765.659 kb on - strand, within Xcc-8004.3895.1at 3765.667 kb on + strand, within Xcc-8004.3895.1at 3765.769 kb on + strand, within Xcc-8004.3895.1at 3765.770 kb on - strand, within Xcc-8004.3895.1at 3765.770 kb on - strand, within Xcc-8004.3895.1at 3765.770 kb on - strand, within Xcc-8004.3895.1at 3765.811 kb on + strand, within Xcc-8004.3895.1at 3765.811 kb on + strand, within Xcc-8004.3895.1at 3765.811 kb on + strand, within Xcc-8004.3895.1at 3765.818 kb on - strand, within Xcc-8004.3895.1at 3765.818 kb on - strand, within Xcc-8004.3895.1at 3765.818 kb on - strand, within Xcc-8004.3895.1at 3765.890 kb on - strand, within Xcc-8004.3895.1at 3765.890 kb on - strand, within Xcc-8004.3895.1at 3765.942 kb on + strand, within Xcc-8004.3895.1at 3766.987 kb on + strandat 3766.987 kb on + strandat 3767.108 kb on + strandat 3767.109 kb on - strandat 3767.109 kb on - strandat 3767.109 kb on - strandat 3767.109 kb on - strandat 3767.327 kb on + strand, within Xcc-8004.3896.1at 3767.636 kb on + strand, within Xcc-8004.3896.1at 3767.637 kb on - strand, within Xcc-8004.3896.1at 3767.637 kb on - strand, within Xcc-8004.3896.1at 3767.702 kb on + strand, within Xcc-8004.3896.1at 3767.703 kb on - strand, within Xcc-8004.3896.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,762,514 - +0.7
3,762,595 + +0.0
3,762,595 + +0.1
3,762,595 + -0.9
3,762,596 - -1.9
3,762,596 - +0.8
3,762,596 - +0.3
3,762,617 + -0.8
3,762,617 + -0.2
3,762,740 + -0.4
3,762,740 + +1.0
3,762,740 + -0.7
3,762,741 - +0.1
3,762,741 - +3.1
3,762,741 - +2.0
3,762,915 - Xcc-8004.3894.1 0.40 -0.0
3,762,958 + Xcc-8004.3894.1 0.48 +1.2
3,762,958 + Xcc-8004.3894.1 0.48 -0.7
3,762,958 + Xcc-8004.3894.1 0.48 +0.0
3,762,959 - Xcc-8004.3894.1 0.48 -2.3
3,762,962 - Xcc-8004.3894.1 0.49 -0.9
3,763,015 + Xcc-8004.3894.1 0.60 +0.2
3,763,016 - Xcc-8004.3894.1 0.60 -0.7
3,763,051 + Xcc-8004.3894.1 0.67 -1.6
3,763,115 - Xcc-8004.3894.1 0.80 -1.4
3,763,159 + Xcc-8004.3894.1 0.89 +0.2
3,763,160 - Xcc-8004.3894.1 0.89 -0.4
3,763,160 - Xcc-8004.3894.1 0.89 +0.3
3,763,160 - Xcc-8004.3894.1 0.89 -0.1
3,763,227 - +1.1
3,763,267 + -0.7
3,763,267 + +1.2
3,763,268 - -0.0
3,763,373 + -0.2
3,763,373 + +0.2
3,763,373 + +0.9
3,763,525 + -0.4
3,763,526 - -0.3
3,764,323 + Xcc-8004.3895.1 0.26 +2.4
3,764,323 + Xcc-8004.3895.1 0.26 +2.3
3,764,323 + Xcc-8004.3895.1 0.26 -0.1
3,764,324 - Xcc-8004.3895.1 0.26 +0.7
3,764,324 - Xcc-8004.3895.1 0.26 +0.1
3,764,324 - Xcc-8004.3895.1 0.26 -0.5
3,764,324 - Xcc-8004.3895.1 0.26 -0.7
3,764,350 - Xcc-8004.3895.1 0.27 +1.5
3,764,401 + Xcc-8004.3895.1 0.29 -1.3
3,764,401 + Xcc-8004.3895.1 0.29 -0.3
3,764,402 - Xcc-8004.3895.1 0.29 +0.7
3,764,533 - Xcc-8004.3895.1 0.33 +0.7
3,764,611 + Xcc-8004.3895.1 0.35 -0.0
3,764,612 - Xcc-8004.3895.1 0.35 -0.8
3,764,612 - Xcc-8004.3895.1 0.35 +0.2
3,764,720 - Xcc-8004.3895.1 0.38 +0.3
3,764,806 + Xcc-8004.3895.1 0.41 +0.1
3,764,807 - Xcc-8004.3895.1 0.41 -1.0
3,764,807 - Xcc-8004.3895.1 0.41 +1.5
3,764,903 - Xcc-8004.3895.1 0.44 +0.9
3,764,903 - Xcc-8004.3895.1 0.44 +0.3
3,764,941 + Xcc-8004.3895.1 0.45 -0.4
3,765,144 + Xcc-8004.3895.1 0.52 +0.2
3,765,145 - Xcc-8004.3895.1 0.52 +0.4
3,765,416 - Xcc-8004.3895.1 0.60 +0.5
3,765,421 + Xcc-8004.3895.1 0.60 +0.0
3,765,421 + Xcc-8004.3895.1 0.60 -0.3
3,765,421 + Xcc-8004.3895.1 0.60 -0.8
3,765,421 + Xcc-8004.3895.1 0.60 +0.0
3,765,422 - Xcc-8004.3895.1 0.60 -1.2
3,765,422 - Xcc-8004.3895.1 0.60 -1.1
3,765,422 - Xcc-8004.3895.1 0.60 +1.2
3,765,556 + Xcc-8004.3895.1 0.64 -0.6
3,765,658 + Xcc-8004.3895.1 0.67 +0.2
3,765,659 - Xcc-8004.3895.1 0.67 -0.5
3,765,659 - Xcc-8004.3895.1 0.67 +0.2
3,765,667 + Xcc-8004.3895.1 0.68 -0.2
3,765,769 + Xcc-8004.3895.1 0.71 +1.5
3,765,770 - Xcc-8004.3895.1 0.71 +1.4
3,765,770 - Xcc-8004.3895.1 0.71 -1.3
3,765,770 - Xcc-8004.3895.1 0.71 -1.9
3,765,811 + Xcc-8004.3895.1 0.72 +1.5
3,765,811 + Xcc-8004.3895.1 0.72 -1.3
3,765,811 + Xcc-8004.3895.1 0.72 -2.7
3,765,818 - Xcc-8004.3895.1 0.72 +0.2
3,765,818 - Xcc-8004.3895.1 0.72 -0.4
3,765,818 - Xcc-8004.3895.1 0.72 +0.5
3,765,890 - Xcc-8004.3895.1 0.74 -0.6
3,765,890 - Xcc-8004.3895.1 0.74 +0.3
3,765,942 + Xcc-8004.3895.1 0.76 +0.5
3,766,987 + +0.1
3,766,987 + +0.9
3,767,108 + -0.8
3,767,109 - +0.8
3,767,109 - -0.4
3,767,109 - -0.0
3,767,109 - +0.5
3,767,327 + Xcc-8004.3896.1 0.22 +0.0
3,767,636 + Xcc-8004.3896.1 0.44 +0.2
3,767,637 - Xcc-8004.3896.1 0.44 -0.5
3,767,637 - Xcc-8004.3896.1 0.44 +0.8
3,767,702 + Xcc-8004.3896.1 0.48 +0.6
3,767,703 - Xcc-8004.3896.1 0.48 +0.1

Or see this region's nucleotide sequence