Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3894.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,761,756	+		Xcc-8004.3893.1	0.68	-0.2
3,761,757	-		Xcc-8004.3893.1	0.68	+0.4
3,761,825	+		Xcc-8004.3893.1	0.72	+1.5
3,761,826	-		Xcc-8004.3893.1	0.72	+0.3
3,761,826	-		Xcc-8004.3893.1	0.72	-0.2
3,762,101	+		Xcc-8004.3893.1	0.86	+2.4
3,762,290	+				+0.1
3,762,291	-				+0.3
3,762,291	-				-0.8
3,762,291	-				-0.4
3,762,514	-				+0.7
3,762,595	+				+0.0
3,762,595	+				+0.1
3,762,595	+				-0.9
3,762,596	-				-1.9
3,762,596	-				+0.8
3,762,596	-				+0.3
3,762,617	+				-0.8
3,762,617	+				-0.2
3,762,740	+				-0.4
3,762,740	+				+1.0
3,762,740	+				-0.7
3,762,741	-				+0.1
3,762,741	-				+3.1
3,762,741	-				+2.0
3,762,915	-		Xcc-8004.3894.1	0.40	-0.0
3,762,958	+		Xcc-8004.3894.1	0.48	+1.2
3,762,958	+		Xcc-8004.3894.1	0.48	-0.7
3,762,958	+		Xcc-8004.3894.1	0.48	+0.0
3,762,959	-		Xcc-8004.3894.1	0.48	-2.3
3,762,962	-		Xcc-8004.3894.1	0.49	-0.9
3,763,015	+		Xcc-8004.3894.1	0.60	+0.2
3,763,016	-		Xcc-8004.3894.1	0.60	-0.7
3,763,051	+		Xcc-8004.3894.1	0.67	-1.6
3,763,115	-		Xcc-8004.3894.1	0.80	-1.4
3,763,159	+		Xcc-8004.3894.1	0.89	+0.2
3,763,160	-		Xcc-8004.3894.1	0.89	-0.4
3,763,160	-		Xcc-8004.3894.1	0.89	+0.3
3,763,160	-		Xcc-8004.3894.1	0.89	-0.1
3,763,227	-				+1.1
3,763,267	+				-0.7
3,763,267	+				+1.2
3,763,268	-				-0.0
3,763,373	+				-0.2
3,763,373	+				+0.2
3,763,373	+				+0.9
3,763,525	+				-0.4
3,763,526	-				-0.3