Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3888.1 and Xcc-8004.3889.1 are separated by 254 nucleotides Xcc-8004.3889.1 and Xcc-8004.3891.1 are separated by 204 nucleotides Xcc-8004.3891.1 and Xcc-8004.3892.1 are separated by 469 nucleotides
Xcc-8004.3888.1: Xcc-8004.3888.1 - FIG01210089: hypothetical protein, at 3,755,065 to 3,755,574
Xcc-8004.3888.1
Xcc-8004.3889.1: Xcc-8004.3889.1 - FIG01210587: hypothetical protein, at 3,755,829 to 3,756,233
Xcc-8004.3889.1
Xcc-8004.3891.1: Xcc-8004.3891.1 - alanyl dipeptidyl peptidase, at 3,756,438 to 3,758,555
Xcc-8004.3891.1
Xcc-8004.3892.1: Xcc-8004.3892.1 - FIG01209946: hypothetical protein, at 3,759,025 to 3,760,047
Xcc-8004.3892.1
Position (kb) 3756
3757
3758
3759 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3755.548 kb on + strand at 3755.549 kb on - strand at 3755.674 kb on + strand at 3755.674 kb on + strand at 3755.675 kb on - strand at 3755.709 kb on + strand at 3755.710 kb on - strand at 3755.813 kb on - strand at 3755.853 kb on + strand at 3755.853 kb on + strand at 3755.854 kb on - strand at 3755.854 kb on - strand at 3756.102 kb on + strand, within Xcc-8004.3889.1 at 3756.102 kb on + strand, within Xcc-8004.3889.1 at 3756.103 kb on - strand, within Xcc-8004.3889.1 at 3756.103 kb on - strand, within Xcc-8004.3889.1 at 3756.103 kb on - strand, within Xcc-8004.3889.1 at 3756.106 kb on + strand, within Xcc-8004.3889.1 at 3756.107 kb on - strand, within Xcc-8004.3889.1 at 3756.114 kb on + strand, within Xcc-8004.3889.1 at 3756.160 kb on - strand, within Xcc-8004.3889.1 at 3756.232 kb on - strand at 3756.232 kb on - strand at 3756.232 kb on - strand at 3756.232 kb on - strand at 3756.242 kb on - strand at 3756.535 kb on + strand at 3756.685 kb on + strand, within Xcc-8004.3891.1 at 3756.685 kb on + strand, within Xcc-8004.3891.1 at 3756.754 kb on + strand, within Xcc-8004.3891.1 at 3756.754 kb on + strand, within Xcc-8004.3891.1 at 3756.755 kb on - strand, within Xcc-8004.3891.1 at 3756.835 kb on + strand, within Xcc-8004.3891.1 at 3756.835 kb on + strand, within Xcc-8004.3891.1 at 3756.835 kb on + strand, within Xcc-8004.3891.1 at 3756.844 kb on + strand, within Xcc-8004.3891.1 at 3756.844 kb on + strand, within Xcc-8004.3891.1 at 3756.845 kb on - strand, within Xcc-8004.3891.1 at 3757.030 kb on + strand, within Xcc-8004.3891.1 at 3757.031 kb on - strand, within Xcc-8004.3891.1 at 3757.046 kb on - strand, within Xcc-8004.3891.1 at 3757.127 kb on - strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.144 kb on + strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.145 kb on - strand, within Xcc-8004.3891.1 at 3757.150 kb on + strand, within Xcc-8004.3891.1 at 3757.165 kb on + strand, within Xcc-8004.3891.1 at 3757.165 kb on + strand, within Xcc-8004.3891.1 at 3757.166 kb on - strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.299 kb on + strand, within Xcc-8004.3891.1 at 3757.300 kb on - strand, within Xcc-8004.3891.1 at 3757.300 kb on - strand, within Xcc-8004.3891.1 at 3757.300 kb on - strand, within Xcc-8004.3891.1 at 3757.300 kb on - strand, within Xcc-8004.3891.1 at 3757.300 kb on - strand, within Xcc-8004.3891.1 at 3757.325 kb on + strand, within Xcc-8004.3891.1 at 3757.326 kb on - strand, within Xcc-8004.3891.1 at 3757.326 kb on - strand, within Xcc-8004.3891.1 at 3757.459 kb on + strand, within Xcc-8004.3891.1 at 3757.459 kb on + strand, within Xcc-8004.3891.1 at 3757.459 kb on + strand, within Xcc-8004.3891.1 at 3757.460 kb on - strand, within Xcc-8004.3891.1 at 3757.460 kb on - strand, within Xcc-8004.3891.1 at 3757.460 kb on - strand, within Xcc-8004.3891.1 at 3757.607 kb on - strand, within Xcc-8004.3891.1 at 3757.609 kb on + strand, within Xcc-8004.3891.1 at 3757.609 kb on + strand, within Xcc-8004.3891.1 at 3757.610 kb on - strand, within Xcc-8004.3891.1 at 3757.610 kb on - strand, within Xcc-8004.3891.1 at 3757.610 kb on - strand, within Xcc-8004.3891.1 at 3757.849 kb on + strand, within Xcc-8004.3891.1 at 3757.849 kb on + strand, within Xcc-8004.3891.1 at 3757.991 kb on + strand, within Xcc-8004.3891.1 at 3757.992 kb on - strand, within Xcc-8004.3891.1 at 3758.020 kb on + strand, within Xcc-8004.3891.1 at 3758.020 kb on + strand, within Xcc-8004.3891.1 at 3758.020 kb on + strand, within Xcc-8004.3891.1 at 3758.020 kb on + strand, within Xcc-8004.3891.1 at 3758.149 kb on + strand, within Xcc-8004.3891.1 at 3758.149 kb on + strand, within Xcc-8004.3891.1 at 3758.150 kb on - strand, within Xcc-8004.3891.1 at 3758.216 kb on - strand, within Xcc-8004.3891.1 at 3758.216 kb on - strand, within Xcc-8004.3891.1 at 3758.251 kb on + strand, within Xcc-8004.3891.1 at 3758.251 kb on + strand, within Xcc-8004.3891.1 at 3758.252 kb on - strand, within Xcc-8004.3891.1 at 3758.252 kb on - strand, within Xcc-8004.3891.1 at 3758.409 kb on + strand at 3758.409 kb on + strand at 3758.410 kb on - strand at 3758.410 kb on - strand at 3758.432 kb on + strand at 3758.432 kb on + strand at 3758.432 kb on + strand at 3758.433 kb on - strand at 3758.543 kb on + strand at 3758.544 kb on - strand at 3758.588 kb on - strand at 3758.588 kb on - strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.722 kb on + strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.723 kb on - strand at 3758.820 kb on + strand at 3758.821 kb on - strand at 3758.919 kb on + strand at 3758.919 kb on + strand at 3758.919 kb on + strand at 3758.919 kb on + strand at 3758.920 kb on - strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.050 kb on + strand at 3759.051 kb on - strand at 3759.051 kb on - strand at 3759.051 kb on - strand at 3759.051 kb on - strand at 3759.051 kb on - strand at 3759.128 kb on + strand, within Xcc-8004.3892.1 at 3759.128 kb on + strand, within Xcc-8004.3892.1 at 3759.129 kb on - strand, within Xcc-8004.3892.1 at 3759.152 kb on + strand, within Xcc-8004.3892.1 at 3759.153 kb on - strand, within Xcc-8004.3892.1 at 3759.330 kb on + strand, within Xcc-8004.3892.1 at 3759.330 kb on + strand, within Xcc-8004.3892.1 at 3759.330 kb on + strand, within Xcc-8004.3892.1 at 3759.479 kb on + strand, within Xcc-8004.3892.1 at 3759.479 kb on + strand, within Xcc-8004.3892.1 at 3759.479 kb on + strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.480 kb on - strand, within Xcc-8004.3892.1 at 3759.507 kb on + strand, within Xcc-8004.3892.1 at 3759.508 kb on - strand, within Xcc-8004.3892.1 at 3759.508 kb on - strand, within Xcc-8004.3892.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,755,548 + +2.0 3,755,549 - -0.1 3,755,674 + -0.0 3,755,674 + -0.5 3,755,675 - +0.8 3,755,709 + -0.2 3,755,710 - -0.3 3,755,813 - +0.0 3,755,853 + -0.3 3,755,853 + +1.3 3,755,854 - +0.0 3,755,854 - +0.2 3,756,102 + Xcc-8004.3889.1 0.67 -0.3 3,756,102 + Xcc-8004.3889.1 0.67 +1.9 3,756,103 - Xcc-8004.3889.1 0.68 -0.2 3,756,103 - Xcc-8004.3889.1 0.68 -0.7 3,756,103 - Xcc-8004.3889.1 0.68 -0.7 3,756,106 + Xcc-8004.3889.1 0.68 +0.6 3,756,107 - Xcc-8004.3889.1 0.69 +0.7 3,756,114 + Xcc-8004.3889.1 0.70 +0.9 3,756,160 - Xcc-8004.3889.1 0.82 -2.4 3,756,232 - +2.3 3,756,232 - +0.1 3,756,232 - -1.3 3,756,232 - +1.3 3,756,242 - -0.2 3,756,535 + -1.7 3,756,685 + Xcc-8004.3891.1 0.12 -1.2 3,756,685 + Xcc-8004.3891.1 0.12 -2.0 3,756,754 + Xcc-8004.3891.1 0.15 +0.2 3,756,754 + Xcc-8004.3891.1 0.15 -0.1 3,756,755 - Xcc-8004.3891.1 0.15 -0.9 3,756,835 + Xcc-8004.3891.1 0.19 +0.1 3,756,835 + Xcc-8004.3891.1 0.19 +0.2 3,756,835 + Xcc-8004.3891.1 0.19 +0.4 3,756,844 + Xcc-8004.3891.1 0.19 -0.2 3,756,844 + Xcc-8004.3891.1 0.19 -0.1 3,756,845 - Xcc-8004.3891.1 0.19 +1.6 3,757,030 + Xcc-8004.3891.1 0.28 -0.7 3,757,031 - Xcc-8004.3891.1 0.28 +0.3 3,757,046 - Xcc-8004.3891.1 0.29 -0.6 3,757,127 - Xcc-8004.3891.1 0.33 -1.0 3,757,144 + Xcc-8004.3891.1 0.33 -0.1 3,757,144 + Xcc-8004.3891.1 0.33 +1.0 3,757,144 + Xcc-8004.3891.1 0.33 +0.4 3,757,144 + Xcc-8004.3891.1 0.33 +0.8 3,757,144 + Xcc-8004.3891.1 0.33 -0.5 3,757,144 + Xcc-8004.3891.1 0.33 -1.7 3,757,144 + Xcc-8004.3891.1 0.33 -1.4 3,757,145 - Xcc-8004.3891.1 0.33 +1.0 3,757,145 - Xcc-8004.3891.1 0.33 -1.8 3,757,145 - Xcc-8004.3891.1 0.33 -0.2 3,757,145 - Xcc-8004.3891.1 0.33 -1.6 3,757,150 + Xcc-8004.3891.1 0.34 -2.4 3,757,165 + Xcc-8004.3891.1 0.34 -0.9 3,757,165 + Xcc-8004.3891.1 0.34 +1.4 3,757,166 - Xcc-8004.3891.1 0.34 +1.2 3,757,299 + Xcc-8004.3891.1 0.41 +0.6 3,757,299 + Xcc-8004.3891.1 0.41 +0.3 3,757,299 + Xcc-8004.3891.1 0.41 -0.0 3,757,299 + Xcc-8004.3891.1 0.41 +0.7 3,757,299 + Xcc-8004.3891.1 0.41 +1.3 3,757,299 + Xcc-8004.3891.1 0.41 +0.1 3,757,300 - Xcc-8004.3891.1 0.41 +0.3 3,757,300 - Xcc-8004.3891.1 0.41 +0.2 3,757,300 - Xcc-8004.3891.1 0.41 -1.5 3,757,300 - Xcc-8004.3891.1 0.41 +3.5 3,757,300 - Xcc-8004.3891.1 0.41 -0.6 3,757,325 + Xcc-8004.3891.1 0.42 -1.8 3,757,326 - Xcc-8004.3891.1 0.42 +1.1 3,757,326 - Xcc-8004.3891.1 0.42 +1.2 3,757,459 + Xcc-8004.3891.1 0.48 +0.5 3,757,459 + Xcc-8004.3891.1 0.48 +0.3 3,757,459 + Xcc-8004.3891.1 0.48 +0.0 3,757,460 - Xcc-8004.3891.1 0.48 -0.3 3,757,460 - Xcc-8004.3891.1 0.48 +0.4 3,757,460 - Xcc-8004.3891.1 0.48 +0.7 3,757,607 - Xcc-8004.3891.1 0.55 +0.5 3,757,609 + Xcc-8004.3891.1 0.55 -0.1 3,757,609 + Xcc-8004.3891.1 0.55 -0.2 3,757,610 - Xcc-8004.3891.1 0.55 -1.8 3,757,610 - Xcc-8004.3891.1 0.55 -0.5 3,757,610 - Xcc-8004.3891.1 0.55 +0.1 3,757,849 + Xcc-8004.3891.1 0.67 -2.0 3,757,849 + Xcc-8004.3891.1 0.67 +0.4 3,757,991 + Xcc-8004.3891.1 0.73 +0.1 3,757,992 - Xcc-8004.3891.1 0.73 +0.1 3,758,020 + Xcc-8004.3891.1 0.75 -0.3 3,758,020 + Xcc-8004.3891.1 0.75 -0.0 3,758,020 + Xcc-8004.3891.1 0.75 -1.3 3,758,020 + Xcc-8004.3891.1 0.75 -0.2 3,758,149 + Xcc-8004.3891.1 0.81 -1.7 3,758,149 + Xcc-8004.3891.1 0.81 -0.2 3,758,150 - Xcc-8004.3891.1 0.81 +0.4 3,758,216 - Xcc-8004.3891.1 0.84 -2.1 3,758,216 - Xcc-8004.3891.1 0.84 -0.6 3,758,251 + Xcc-8004.3891.1 0.86 -0.2 3,758,251 + Xcc-8004.3891.1 0.86 -0.9 3,758,252 - Xcc-8004.3891.1 0.86 +0.6 3,758,252 - Xcc-8004.3891.1 0.86 -0.8 3,758,409 + -0.9 3,758,409 + +0.3 3,758,410 - +0.8 3,758,410 - -0.7 3,758,432 + -0.2 3,758,432 + -2.6 3,758,432 + -0.7 3,758,433 - +1.7 3,758,543 + +0.1 3,758,544 - -2.2 3,758,588 - +1.2 3,758,588 - +0.1 3,758,722 + +0.1 3,758,722 + +0.4 3,758,722 + -1.6 3,758,722 + +0.1 3,758,722 + -1.4 3,758,722 + -0.4 3,758,722 + -0.8 3,758,722 + -0.7 3,758,722 + -1.8 3,758,722 + +0.3 3,758,722 + +1.4 3,758,723 - -1.5 3,758,723 - -0.1 3,758,723 - +0.0 3,758,723 - +1.9 3,758,723 - -0.1 3,758,723 - -1.6 3,758,723 - -1.5 3,758,723 - +2.1 3,758,723 - +0.5 3,758,723 - +1.0 3,758,820 + +0.2 3,758,821 - +0.4 3,758,919 + +0.2 3,758,919 + -0.9 3,758,919 + +0.8 3,758,919 + -0.4 3,758,920 - -2.4 3,759,050 + -0.6 3,759,050 + +0.7 3,759,050 + +0.3 3,759,050 + -0.1 3,759,050 + +0.8 3,759,050 + +1.8 3,759,050 + +0.5 3,759,050 + -0.7 3,759,050 + +0.0 3,759,050 + +0.7 3,759,050 + +0.0 3,759,050 + -0.4 3,759,051 - -2.7 3,759,051 - +0.7 3,759,051 - -0.3 3,759,051 - +0.1 3,759,051 - +0.2 3,759,128 + Xcc-8004.3892.1 0.10 +1.0 3,759,128 + Xcc-8004.3892.1 0.10 -1.0 3,759,129 - Xcc-8004.3892.1 0.10 +0.4 3,759,152 + Xcc-8004.3892.1 0.12 +0.2 3,759,153 - Xcc-8004.3892.1 0.13 -0.8 3,759,330 + Xcc-8004.3892.1 0.30 +1.6 3,759,330 + Xcc-8004.3892.1 0.30 -0.5 3,759,330 + Xcc-8004.3892.1 0.30 +1.6 3,759,479 + Xcc-8004.3892.1 0.44 -1.7 3,759,479 + Xcc-8004.3892.1 0.44 +1.0 3,759,479 + Xcc-8004.3892.1 0.44 +0.6 3,759,480 - Xcc-8004.3892.1 0.44 +1.0 3,759,480 - Xcc-8004.3892.1 0.44 +1.1 3,759,480 - Xcc-8004.3892.1 0.44 +1.0 3,759,480 - Xcc-8004.3892.1 0.44 +0.1 3,759,480 - Xcc-8004.3892.1 0.44 +0.4 3,759,480 - Xcc-8004.3892.1 0.44 +0.6 3,759,507 + Xcc-8004.3892.1 0.47 +0.3 3,759,508 - Xcc-8004.3892.1 0.47 +1.3 3,759,508 - Xcc-8004.3892.1 0.47 +1.3
Or see this region's nucleotide sequence