Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3867.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3866.1 and Xcc-8004.3867.1 overlap by 8 nucleotidesXcc-8004.3867.1 and Xcc-8004.3868.1 overlap by 35 nucleotides Xcc-8004.3866.1: Xcc-8004.3866.1 - two-component system sensor protein, at 3,732,080 to 3,733,363 Xcc-8004.3866.1 Xcc-8004.3867.1: Xcc-8004.3867.1 - Two-component system regulatory protein, at 3,733,356 to 3,734,075 Xcc-8004.3867.1 Xcc-8004.3868.1: Xcc-8004.3868.1 - Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB, at 3,734,041 to 3,735,945 Xcc-8004.3868.1 Position (kb) 3733 3734 3735Strain fitness (log2 ratio) -2 -1 0 1 2at 3732.759 kb on + strand, within Xcc-8004.3866.1at 3732.760 kb on - strand, within Xcc-8004.3866.1at 3732.760 kb on - strand, within Xcc-8004.3866.1at 3732.786 kb on + strand, within Xcc-8004.3866.1at 3732.787 kb on - strand, within Xcc-8004.3866.1at 3732.787 kb on - strand, within Xcc-8004.3866.1at 3732.787 kb on - strand, within Xcc-8004.3866.1at 3732.903 kb on + strand, within Xcc-8004.3866.1at 3732.903 kb on + strand, within Xcc-8004.3866.1at 3732.903 kb on + strand, within Xcc-8004.3866.1at 3732.903 kb on + strand, within Xcc-8004.3866.1at 3732.903 kb on + strand, within Xcc-8004.3866.1at 3732.903 kb on + strand, within Xcc-8004.3866.1at 3732.904 kb on - strand, within Xcc-8004.3866.1at 3732.904 kb on - strand, within Xcc-8004.3866.1at 3732.904 kb on - strand, within Xcc-8004.3866.1at 3732.904 kb on - strand, within Xcc-8004.3866.1at 3732.904 kb on - strand, within Xcc-8004.3866.1at 3733.269 kb on + strandat 3733.270 kb on - strandat 3733.357 kb on + strandat 3733.357 kb on + strandat 3733.357 kb on + strandat 3733.358 kb on - strandat 3733.489 kb on + strand, within Xcc-8004.3867.1at 3733.489 kb on + strand, within Xcc-8004.3867.1at 3733.489 kb on + strand, within Xcc-8004.3867.1at 3733.490 kb on - strand, within Xcc-8004.3867.1at 3733.490 kb on - strand, within Xcc-8004.3867.1at 3733.490 kb on - strand, within Xcc-8004.3867.1at 3733.536 kb on + strand, within Xcc-8004.3867.1at 3733.780 kb on + strand, within Xcc-8004.3867.1at 3733.780 kb on + strand, within Xcc-8004.3867.1at 3733.780 kb on + strand, within Xcc-8004.3867.1at 3733.781 kb on - strand, within Xcc-8004.3867.1at 3733.781 kb on - strand, within Xcc-8004.3867.1at 3733.781 kb on - strand, within Xcc-8004.3867.1at 3733.942 kb on + strand, within Xcc-8004.3867.1at 3733.942 kb on + strand, within Xcc-8004.3867.1at 3733.942 kb on + strand, within Xcc-8004.3867.1at 3733.943 kb on - strand, within Xcc-8004.3867.1at 3733.943 kb on - strand, within Xcc-8004.3867.1at 3733.943 kb on - strand, within Xcc-8004.3867.1at 3734.001 kb on - strand, within Xcc-8004.3867.1at 3734.020 kb on + strandat 3734.020 kb on + strandat 3734.120 kb on + strandat 3734.121 kb on - strandat 3734.413 kb on + strand, within Xcc-8004.3868.1at 3734.413 kb on + strand, within Xcc-8004.3868.1at 3734.413 kb on + strand, within Xcc-8004.3868.1at 3734.413 kb on + strand, within Xcc-8004.3868.1at 3734.414 kb on - strand, within Xcc-8004.3868.1at 3734.458 kb on + strand, within Xcc-8004.3868.1at 3734.459 kb on - strand, within Xcc-8004.3868.1at 3734.459 kb on - strand, within Xcc-8004.3868.1at 3734.459 kb on - strand, within Xcc-8004.3868.1at 3734.578 kb on + strand, within Xcc-8004.3868.1at 3734.966 kb on - strand, within Xcc-8004.3868.1at 3735.040 kb on + strand, within Xcc-8004.3868.1at 3735.043 kb on + strand, within Xcc-8004.3868.1at 3735.044 kb on - strand, within Xcc-8004.3868.1at 3735.044 kb on - strand, within Xcc-8004.3868.1at 3735.044 kb on - strand, within Xcc-8004.3868.1at 3735.044 kb on - strand, within Xcc-8004.3868.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,732,759 + Xcc-8004.3866.1 0.53 +0.2
3,732,760 - Xcc-8004.3866.1 0.53 +0.4
3,732,760 - Xcc-8004.3866.1 0.53 +0.0
3,732,786 + Xcc-8004.3866.1 0.55 -0.9
3,732,787 - Xcc-8004.3866.1 0.55 +0.4
3,732,787 - Xcc-8004.3866.1 0.55 +0.6
3,732,787 - Xcc-8004.3866.1 0.55 -2.3
3,732,903 + Xcc-8004.3866.1 0.64 -0.5
3,732,903 + Xcc-8004.3866.1 0.64 +0.4
3,732,903 + Xcc-8004.3866.1 0.64 +1.0
3,732,903 + Xcc-8004.3866.1 0.64 +0.8
3,732,903 + Xcc-8004.3866.1 0.64 +0.5
3,732,903 + Xcc-8004.3866.1 0.64 +0.1
3,732,904 - Xcc-8004.3866.1 0.64 +2.3
3,732,904 - Xcc-8004.3866.1 0.64 -2.3
3,732,904 - Xcc-8004.3866.1 0.64 -0.4
3,732,904 - Xcc-8004.3866.1 0.64 -0.4
3,732,904 - Xcc-8004.3866.1 0.64 -0.4
3,733,269 + +0.2
3,733,270 - -0.4
3,733,357 + +0.7
3,733,357 + -0.4
3,733,357 + +0.5
3,733,358 - +0.7
3,733,489 + Xcc-8004.3867.1 0.18 -0.5
3,733,489 + Xcc-8004.3867.1 0.18 +1.7
3,733,489 + Xcc-8004.3867.1 0.18 -0.3
3,733,490 - Xcc-8004.3867.1 0.19 +0.5
3,733,490 - Xcc-8004.3867.1 0.19 -1.9
3,733,490 - Xcc-8004.3867.1 0.19 -1.8
3,733,536 + Xcc-8004.3867.1 0.25 -0.1
3,733,780 + Xcc-8004.3867.1 0.59 +0.7
3,733,780 + Xcc-8004.3867.1 0.59 +0.7
3,733,780 + Xcc-8004.3867.1 0.59 +1.0
3,733,781 - Xcc-8004.3867.1 0.59 -0.8
3,733,781 - Xcc-8004.3867.1 0.59 +0.9
3,733,781 - Xcc-8004.3867.1 0.59 +1.2
3,733,942 + Xcc-8004.3867.1 0.81 +0.0
3,733,942 + Xcc-8004.3867.1 0.81 -0.2
3,733,942 + Xcc-8004.3867.1 0.81 -0.8
3,733,943 - Xcc-8004.3867.1 0.82 -0.6
3,733,943 - Xcc-8004.3867.1 0.82 -0.0
3,733,943 - Xcc-8004.3867.1 0.82 +0.4
3,734,001 - Xcc-8004.3867.1 0.90 +0.0
3,734,020 + +0.7
3,734,020 + -1.5
3,734,120 + +1.0
3,734,121 - -0.3
3,734,413 + Xcc-8004.3868.1 0.20 -0.2
3,734,413 + Xcc-8004.3868.1 0.20 +0.0
3,734,413 + Xcc-8004.3868.1 0.20 +0.1
3,734,413 + Xcc-8004.3868.1 0.20 -0.6
3,734,414 - Xcc-8004.3868.1 0.20 +0.8
3,734,458 + Xcc-8004.3868.1 0.22 +0.5
3,734,459 - Xcc-8004.3868.1 0.22 -0.0
3,734,459 - Xcc-8004.3868.1 0.22 +1.5
3,734,459 - Xcc-8004.3868.1 0.22 +1.5
3,734,578 + Xcc-8004.3868.1 0.28 -1.1
3,734,966 - Xcc-8004.3868.1 0.49 -0.4
3,735,040 + Xcc-8004.3868.1 0.52 +0.4
3,735,043 + Xcc-8004.3868.1 0.53 +0.4
3,735,044 - Xcc-8004.3868.1 0.53 +0.2
3,735,044 - Xcc-8004.3868.1 0.53 -0.9
3,735,044 - Xcc-8004.3868.1 0.53 -1.9
3,735,044 - Xcc-8004.3868.1 0.53 -1.2

Or see this region's nucleotide sequence