Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3864.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3862.1 and Xcc-8004.3863.1 are separated by 36 nucleotidesXcc-8004.3863.1 and Xcc-8004.3864.1 are separated by 2 nucleotidesXcc-8004.3864.1 and Xcc-8004.3865.1 are separated by 15 nucleotidesXcc-8004.3865.1 and Xcc-8004.3866.1 are separated by 33 nucleotides Xcc-8004.3862.1: Xcc-8004.3862.1 - Septum site-determining protein MinC, at 3,729,615 to 3,730,355 Xcc-8004.3862.1 Xcc-8004.3863.1: Xcc-8004.3863.1 - Septum site-determining protein MinD, at 3,730,392 to 3,731,201 Xcc-8004.3863.1 Xcc-8004.3864.1: Xcc-8004.3864.1 - Cell division topological specificity factor MinE, at 3,731,204 to 3,731,461 Xcc-8004.3864.1 Xcc-8004.3865.1: Xcc-8004.3865.1 - FIG01211221: hypothetical protein, at 3,731,477 to 3,732,046 Xcc-8004.3865.1 Xcc-8004.3866.1: Xcc-8004.3866.1 - two-component system sensor protein, at 3,732,080 to 3,733,363 Xcc-8004.3866.1 Position (kb) 3731 3732Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3730.260 kb on + strand, within Xcc-8004.3862.1at 3730.261 kb on - strand, within Xcc-8004.3862.1at 3730.376 kb on - strandat 3730.376 kb on - strandat 3730.408 kb on + strandat 3730.408 kb on + strandat 3730.409 kb on - strandat 3730.409 kb on - strandat 3730.564 kb on - strand, within Xcc-8004.3863.1at 3730.641 kb on + strand, within Xcc-8004.3863.1at 3730.642 kb on - strand, within Xcc-8004.3863.1at 3730.738 kb on - strand, within Xcc-8004.3863.1at 3730.791 kb on + strand, within Xcc-8004.3863.1at 3730.791 kb on + strand, within Xcc-8004.3863.1at 3730.791 kb on + strand, within Xcc-8004.3863.1at 3730.792 kb on - strand, within Xcc-8004.3863.1at 3730.792 kb on - strand, within Xcc-8004.3863.1at 3730.792 kb on - strand, within Xcc-8004.3863.1at 3730.792 kb on - strand, within Xcc-8004.3863.1at 3730.792 kb on - strand, within Xcc-8004.3863.1at 3730.936 kb on - strand, within Xcc-8004.3863.1at 3731.103 kb on + strand, within Xcc-8004.3863.1at 3731.459 kb on + strandat 3731.459 kb on + strandat 3731.459 kb on + strandat 3731.459 kb on + strandat 3731.459 kb on + strandat 3731.460 kb on - strandat 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.741 kb on + strand, within Xcc-8004.3865.1at 3731.742 kb on - strand, within Xcc-8004.3865.1at 3731.742 kb on - strand, within Xcc-8004.3865.1at 3731.742 kb on - strand, within Xcc-8004.3865.1at 3731.742 kb on - strand, within Xcc-8004.3865.1at 3731.742 kb on - strand, within Xcc-8004.3865.1at 3731.742 kb on - strand, within Xcc-8004.3865.1at 3731.742 kb on - strand, within Xcc-8004.3865.1at 3731.830 kb on + strand, within Xcc-8004.3865.1at 3731.830 kb on + strand, within Xcc-8004.3865.1at 3731.874 kb on - strand, within Xcc-8004.3865.1at 3731.951 kb on + strand, within Xcc-8004.3865.1at 3731.952 kb on - strand, within Xcc-8004.3865.1at 3731.952 kb on - strand, within Xcc-8004.3865.1at 3731.958 kb on - strand, within Xcc-8004.3865.1at 3732.044 kb on + strandat 3732.044 kb on + strandat 3732.045 kb on - strandat 3732.240 kb on + strand, within Xcc-8004.3866.1at 3732.240 kb on + strand, within Xcc-8004.3866.1at 3732.240 kb on + strand, within Xcc-8004.3866.1at 3732.241 kb on - strand, within Xcc-8004.3866.1at 3732.241 kb on - strand, within Xcc-8004.3866.1at 3732.241 kb on - strand, within Xcc-8004.3866.1at 3732.241 kb on - strand, within Xcc-8004.3866.1at 3732.241 kb on - strand, within Xcc-8004.3866.1at 3732.241 kb on - strand, within Xcc-8004.3866.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,730,260 + Xcc-8004.3862.1 0.87 +1.5
3,730,261 - Xcc-8004.3862.1 0.87 +1.7
3,730,376 - +1.5
3,730,376 - -0.2
3,730,408 + -0.5
3,730,408 + +0.4
3,730,409 - +0.8
3,730,409 - +0.6
3,730,564 - Xcc-8004.3863.1 0.21 +1.1
3,730,641 + Xcc-8004.3863.1 0.31 -0.9
3,730,642 - Xcc-8004.3863.1 0.31 +1.3
3,730,738 - Xcc-8004.3863.1 0.43 -0.1
3,730,791 + Xcc-8004.3863.1 0.49 -0.6
3,730,791 + Xcc-8004.3863.1 0.49 +0.7
3,730,791 + Xcc-8004.3863.1 0.49 -0.3
3,730,792 - Xcc-8004.3863.1 0.49 +3.1
3,730,792 - Xcc-8004.3863.1 0.49 -0.5
3,730,792 - Xcc-8004.3863.1 0.49 +0.1
3,730,792 - Xcc-8004.3863.1 0.49 -2.5
3,730,792 - Xcc-8004.3863.1 0.49 -0.7
3,730,936 - Xcc-8004.3863.1 0.67 -0.4
3,731,103 + Xcc-8004.3863.1 0.88 -1.5
3,731,459 + -1.5
3,731,459 + -1.2
3,731,459 + -1.0
3,731,459 + +0.0
3,731,459 + -1.3
3,731,460 - -0.8
3,731,741 + Xcc-8004.3865.1 0.46 -0.2
3,731,741 + Xcc-8004.3865.1 0.46 +0.9
3,731,741 + Xcc-8004.3865.1 0.46 +0.9
3,731,741 + Xcc-8004.3865.1 0.46 +1.7
3,731,741 + Xcc-8004.3865.1 0.46 +0.3
3,731,741 + Xcc-8004.3865.1 0.46 +1.0
3,731,741 + Xcc-8004.3865.1 0.46 +0.4
3,731,741 + Xcc-8004.3865.1 0.46 -0.4
3,731,741 + Xcc-8004.3865.1 0.46 -0.4
3,731,741 + Xcc-8004.3865.1 0.46 +0.3
3,731,741 + Xcc-8004.3865.1 0.46 +0.5
3,731,742 - Xcc-8004.3865.1 0.46 +0.1
3,731,742 - Xcc-8004.3865.1 0.46 +0.3
3,731,742 - Xcc-8004.3865.1 0.46 +1.5
3,731,742 - Xcc-8004.3865.1 0.46 -1.1
3,731,742 - Xcc-8004.3865.1 0.46 +0.9
3,731,742 - Xcc-8004.3865.1 0.46 +0.7
3,731,742 - Xcc-8004.3865.1 0.46 +0.4
3,731,830 + Xcc-8004.3865.1 0.62 +0.1
3,731,830 + Xcc-8004.3865.1 0.62 +1.4
3,731,874 - Xcc-8004.3865.1 0.70 +0.8
3,731,951 + Xcc-8004.3865.1 0.83 +0.7
3,731,952 - Xcc-8004.3865.1 0.83 -0.2
3,731,952 - Xcc-8004.3865.1 0.83 -1.3
3,731,958 - Xcc-8004.3865.1 0.84 -0.1
3,732,044 + +1.8
3,732,044 + -1.7
3,732,045 - -1.9
3,732,240 + Xcc-8004.3866.1 0.12 +0.3
3,732,240 + Xcc-8004.3866.1 0.12 -0.0
3,732,240 + Xcc-8004.3866.1 0.12 +0.5
3,732,241 - Xcc-8004.3866.1 0.13 -1.9
3,732,241 - Xcc-8004.3866.1 0.13 +0.3
3,732,241 - Xcc-8004.3866.1 0.13 +1.1
3,732,241 - Xcc-8004.3866.1 0.13 +0.5
3,732,241 - Xcc-8004.3866.1 0.13 +0.5
3,732,241 - Xcc-8004.3866.1 0.13 +0.5

Or see this region's nucleotide sequence