Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3773.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,645,147	+		Xcc-8004.3772.1	0.16	+0.8
3,645,148	-		Xcc-8004.3772.1	0.16	+0.2
3,645,148	-		Xcc-8004.3772.1	0.16	+1.7
3,645,148	-		Xcc-8004.3772.1	0.16	+0.9
3,645,487	-		Xcc-8004.3772.1	0.56	-0.3
3,645,487	-		Xcc-8004.3772.1	0.56	+0.4
3,645,487	-		Xcc-8004.3772.1	0.56	-0.4
3,645,507	+		Xcc-8004.3772.1	0.59	+1.8
3,645,507	+		Xcc-8004.3772.1	0.59	-0.4
3,645,507	+		Xcc-8004.3772.1	0.59	+1.1
3,645,507	+		Xcc-8004.3772.1	0.59	-1.0
3,645,507	+		Xcc-8004.3772.1	0.59	-0.2
3,645,508	-		Xcc-8004.3772.1	0.59	-0.5
3,645,508	-		Xcc-8004.3772.1	0.59	-0.6
3,645,508	-		Xcc-8004.3772.1	0.59	+0.7
3,645,508	-		Xcc-8004.3772.1	0.59	-1.4
3,645,508	-		Xcc-8004.3772.1	0.59	-0.0
3,645,508	-		Xcc-8004.3772.1	0.59	-1.2
3,645,508	-		Xcc-8004.3772.1	0.59	+0.2
3,645,795	+				-2.0
3,645,795	+				+1.7
3,645,795	+				-0.9
3,645,796	-				+0.1
3,645,796	-				+0.2
3,645,834	+				+0.2
3,645,834	+				-0.1
3,645,835	-				-0.8
3,645,835	-				-0.6
3,645,931	+				+0.1
3,645,931	+				-0.4
3,645,931	+				-0.0
3,645,932	-				-0.6
3,645,958	+				+1.5
3,645,959	-				+0.2
3,646,116	+				+0.8
3,646,117	-				+0.4
3,646,117	-				+0.0
3,646,117	-				+0.2
3,646,117	-				-1.3
3,646,296	+		Xcc-8004.3773.1	0.14	+0.6
3,646,296	+		Xcc-8004.3773.1	0.14	-0.5
3,646,296	+		Xcc-8004.3773.1	0.14	-0.6
3,646,296	+		Xcc-8004.3773.1	0.14	-0.8
3,646,312	+		Xcc-8004.3773.1	0.15	-0.5
3,646,313	-		Xcc-8004.3773.1	0.15	+1.1
3,646,456	-		Xcc-8004.3773.1	0.26	+0.6
3,646,604	+		Xcc-8004.3773.1	0.37	-0.0
3,646,605	-		Xcc-8004.3773.1	0.37	-0.3
3,646,668	-		Xcc-8004.3773.1	0.42	+0.0
3,646,723	-		Xcc-8004.3773.1	0.46	+0.2
3,646,723	-		Xcc-8004.3773.1	0.46	-2.1
3,646,845	+		Xcc-8004.3773.1	0.56	+2.2
3,647,033	-		Xcc-8004.3773.1	0.70	-1.2
3,647,067	+		Xcc-8004.3773.1	0.73	-0.6
3,647,325	+				-1.8
3,647,325	+				+0.8
3,647,326	-				-0.8
3,647,423	-				-0.2
3,647,465	-				-0.6