Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3771.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3769.1 and Xcc-8004.3770.1 are separated by 108 nucleotidesXcc-8004.3770.1 and Xcc-8004.3771.1 overlap by 10 nucleotidesXcc-8004.3771.1 and Xcc-8004.3772.1 are separated by 1 nucleotides Xcc-8004.3769.1: Xcc-8004.3769.1 - SSU ribosomal protein S16p, at 3,642,761 to 3,643,021 Xcc-8004.3769.1 Xcc-8004.3770.1: Xcc-8004.3770.1 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 3,643,130 to 3,643,927 Xcc-8004.3770.1 Xcc-8004.3771.1: Xcc-8004.3771.1 - 2-nitropropane dioxygenase, at 3,643,918 to 3,645,012 Xcc-8004.3771.1 Xcc-8004.3772.1: Xcc-8004.3772.1 - FIG00469906: hypothetical protein, at 3,645,014 to 3,645,853 Xcc-8004.3772.1 Position (kb) 3643 3644 3645 3646Strain fitness (log2 ratio) -2 -1 0 1 2at 3643.189 kb on + strandat 3643.189 kb on + strandat 3643.190 kb on - strandat 3643.190 kb on - strandat 3643.190 kb on - strandat 3643.246 kb on + strand, within Xcc-8004.3770.1at 3643.246 kb on + strand, within Xcc-8004.3770.1at 3643.247 kb on - strand, within Xcc-8004.3770.1at 3643.247 kb on - strand, within Xcc-8004.3770.1at 3643.247 kb on - strand, within Xcc-8004.3770.1at 3643.274 kb on + strand, within Xcc-8004.3770.1at 3643.274 kb on + strand, within Xcc-8004.3770.1at 3643.274 kb on + strand, within Xcc-8004.3770.1at 3643.274 kb on + strand, within Xcc-8004.3770.1at 3643.275 kb on - strand, within Xcc-8004.3770.1at 3643.275 kb on - strand, within Xcc-8004.3770.1at 3643.551 kb on + strand, within Xcc-8004.3770.1at 3643.551 kb on + strand, within Xcc-8004.3770.1at 3643.551 kb on + strand, within Xcc-8004.3770.1at 3643.551 kb on + strand, within Xcc-8004.3770.1at 3643.552 kb on - strand, within Xcc-8004.3770.1at 3643.552 kb on - strand, within Xcc-8004.3770.1at 3643.552 kb on - strand, within Xcc-8004.3770.1at 3643.552 kb on - strand, within Xcc-8004.3770.1at 3643.656 kb on + strand, within Xcc-8004.3770.1at 3643.656 kb on + strand, within Xcc-8004.3770.1at 3643.724 kb on + strand, within Xcc-8004.3770.1at 3643.724 kb on + strand, within Xcc-8004.3770.1at 3643.724 kb on + strand, within Xcc-8004.3770.1at 3643.724 kb on + strand, within Xcc-8004.3770.1at 3643.725 kb on - strand, within Xcc-8004.3770.1at 3643.858 kb on - strandat 3643.858 kb on - strandat 3643.858 kb on - strandat 3643.858 kb on - strandat 3644.084 kb on - strand, within Xcc-8004.3771.1at 3644.135 kb on + strand, within Xcc-8004.3771.1at 3644.135 kb on + strand, within Xcc-8004.3771.1at 3644.135 kb on + strand, within Xcc-8004.3771.1at 3644.135 kb on + strand, within Xcc-8004.3771.1at 3644.136 kb on - strand, within Xcc-8004.3771.1at 3644.136 kb on - strand, within Xcc-8004.3771.1at 3644.136 kb on - strand, within Xcc-8004.3771.1at 3644.136 kb on - strand, within Xcc-8004.3771.1at 3644.978 kb on + strandat 3644.978 kb on + strandat 3644.979 kb on - strandat 3645.147 kb on + strand, within Xcc-8004.3772.1at 3645.148 kb on - strand, within Xcc-8004.3772.1at 3645.148 kb on - strand, within Xcc-8004.3772.1at 3645.148 kb on - strand, within Xcc-8004.3772.1at 3645.487 kb on - strand, within Xcc-8004.3772.1at 3645.487 kb on - strand, within Xcc-8004.3772.1at 3645.487 kb on - strand, within Xcc-8004.3772.1at 3645.507 kb on + strand, within Xcc-8004.3772.1at 3645.507 kb on + strand, within Xcc-8004.3772.1at 3645.507 kb on + strand, within Xcc-8004.3772.1at 3645.507 kb on + strand, within Xcc-8004.3772.1at 3645.507 kb on + strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.508 kb on - strand, within Xcc-8004.3772.1at 3645.795 kb on + strandat 3645.795 kb on + strandat 3645.795 kb on + strandat 3645.796 kb on - strandat 3645.796 kb on - strandat 3645.834 kb on + strandat 3645.834 kb on + strandat 3645.835 kb on - strandat 3645.835 kb on - strandat 3645.931 kb on + strandat 3645.931 kb on + strandat 3645.931 kb on + strandat 3645.932 kb on - strandat 3645.958 kb on + strandat 3645.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,643,189 + -0.3
3,643,189 + -0.8
3,643,190 - -1.2
3,643,190 - -0.1
3,643,190 - +0.7
3,643,246 + Xcc-8004.3770.1 0.15 -0.8
3,643,246 + Xcc-8004.3770.1 0.15 -0.9
3,643,247 - Xcc-8004.3770.1 0.15 -1.6
3,643,247 - Xcc-8004.3770.1 0.15 +0.1
3,643,247 - Xcc-8004.3770.1 0.15 +0.8
3,643,274 + Xcc-8004.3770.1 0.18 -1.0
3,643,274 + Xcc-8004.3770.1 0.18 +1.1
3,643,274 + Xcc-8004.3770.1 0.18 -2.1
3,643,274 + Xcc-8004.3770.1 0.18 -0.2
3,643,275 - Xcc-8004.3770.1 0.18 -1.2
3,643,275 - Xcc-8004.3770.1 0.18 +1.2
3,643,551 + Xcc-8004.3770.1 0.53 +0.1
3,643,551 + Xcc-8004.3770.1 0.53 +1.2
3,643,551 + Xcc-8004.3770.1 0.53 +0.1
3,643,551 + Xcc-8004.3770.1 0.53 +0.5
3,643,552 - Xcc-8004.3770.1 0.53 -0.6
3,643,552 - Xcc-8004.3770.1 0.53 -2.0
3,643,552 - Xcc-8004.3770.1 0.53 +0.1
3,643,552 - Xcc-8004.3770.1 0.53 -0.2
3,643,656 + Xcc-8004.3770.1 0.66 +0.2
3,643,656 + Xcc-8004.3770.1 0.66 -1.8
3,643,724 + Xcc-8004.3770.1 0.74 -0.5
3,643,724 + Xcc-8004.3770.1 0.74 +0.7
3,643,724 + Xcc-8004.3770.1 0.74 -0.1
3,643,724 + Xcc-8004.3770.1 0.74 +0.5
3,643,725 - Xcc-8004.3770.1 0.75 -0.2
3,643,858 - -0.0
3,643,858 - -1.1
3,643,858 - -1.2
3,643,858 - +0.1
3,644,084 - Xcc-8004.3771.1 0.15 -0.2
3,644,135 + Xcc-8004.3771.1 0.20 -0.6
3,644,135 + Xcc-8004.3771.1 0.20 -1.8
3,644,135 + Xcc-8004.3771.1 0.20 -0.6
3,644,135 + Xcc-8004.3771.1 0.20 -0.1
3,644,136 - Xcc-8004.3771.1 0.20 -1.2
3,644,136 - Xcc-8004.3771.1 0.20 +0.1
3,644,136 - Xcc-8004.3771.1 0.20 +0.3
3,644,136 - Xcc-8004.3771.1 0.20 -0.0
3,644,978 + -2.2
3,644,978 + -0.1
3,644,979 - +0.1
3,645,147 + Xcc-8004.3772.1 0.16 +0.8
3,645,148 - Xcc-8004.3772.1 0.16 +0.2
3,645,148 - Xcc-8004.3772.1 0.16 +1.7
3,645,148 - Xcc-8004.3772.1 0.16 +0.9
3,645,487 - Xcc-8004.3772.1 0.56 -0.3
3,645,487 - Xcc-8004.3772.1 0.56 +0.4
3,645,487 - Xcc-8004.3772.1 0.56 -0.4
3,645,507 + Xcc-8004.3772.1 0.59 +1.8
3,645,507 + Xcc-8004.3772.1 0.59 -0.4
3,645,507 + Xcc-8004.3772.1 0.59 +1.1
3,645,507 + Xcc-8004.3772.1 0.59 -1.0
3,645,507 + Xcc-8004.3772.1 0.59 -0.2
3,645,508 - Xcc-8004.3772.1 0.59 -0.5
3,645,508 - Xcc-8004.3772.1 0.59 -0.6
3,645,508 - Xcc-8004.3772.1 0.59 +0.7
3,645,508 - Xcc-8004.3772.1 0.59 -1.4
3,645,508 - Xcc-8004.3772.1 0.59 -0.0
3,645,508 - Xcc-8004.3772.1 0.59 -1.2
3,645,508 - Xcc-8004.3772.1 0.59 +0.2
3,645,795 + -2.0
3,645,795 + +1.7
3,645,795 + -0.9
3,645,796 - +0.1
3,645,796 - +0.2
3,645,834 + +0.2
3,645,834 + -0.1
3,645,835 - -0.8
3,645,835 - -0.6
3,645,931 + +0.1
3,645,931 + -0.4
3,645,931 + -0.0
3,645,932 - -0.6
3,645,958 + +1.5
3,645,959 - +0.2

Or see this region's nucleotide sequence