Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3720.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3717.1 and Xcc-8004.3718.1 are separated by 341 nucleotidesXcc-8004.3718.1 and Xcc-8004.3720.1 are separated by 78 nucleotidesXcc-8004.3720.1 and Xcc-8004.3721.1 are separated by 176 nucleotides Xcc-8004.3717.1: Xcc-8004.3717.1 - Hpa2 protein, at 3,596,348 to 3,596,920 Xcc-8004.3717.1 Xcc-8004.3718.1: Xcc-8004.3718.1 - Hpa1 protein, at 3,597,262 to 3,597,663 Xcc-8004.3718.1 Xcc-8004.3720.1: Xcc-8004.3720.1 - Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG), at 3,597,742 to 3,599,559 Xcc-8004.3720.1 Xcc-8004.3721.1: Xcc-8004.3721.1 - Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components), at 3,599,736 to 3,600,566 Xcc-8004.3721.1 Position (kb) 3597 3598 3599 3600Strain fitness (log2 ratio) -1 0 1 2at 3597.061 kb on + strandat 3597.192 kb on - strandat 3597.192 kb on - strandat 3597.711 kb on + strandat 3597.711 kb on + strandat 3598.066 kb on + strand, within Xcc-8004.3720.1at 3598.073 kb on - strand, within Xcc-8004.3720.1at 3598.091 kb on + strand, within Xcc-8004.3720.1at 3598.092 kb on - strand, within Xcc-8004.3720.1at 3598.677 kb on + strand, within Xcc-8004.3720.1at 3598.678 kb on - strand, within Xcc-8004.3720.1at 3598.807 kb on - strand, within Xcc-8004.3720.1at 3598.807 kb on - strand, within Xcc-8004.3720.1at 3598.895 kb on + strand, within Xcc-8004.3720.1at 3598.895 kb on + strand, within Xcc-8004.3720.1at 3598.895 kb on + strand, within Xcc-8004.3720.1at 3598.896 kb on - strand, within Xcc-8004.3720.1at 3598.896 kb on - strand, within Xcc-8004.3720.1at 3598.898 kb on - strand, within Xcc-8004.3720.1at 3598.898 kb on - strand, within Xcc-8004.3720.1at 3598.898 kb on - strand, within Xcc-8004.3720.1at 3598.898 kb on - strand, within Xcc-8004.3720.1at 3598.980 kb on - strand, within Xcc-8004.3720.1at 3598.980 kb on - strand, within Xcc-8004.3720.1at 3599.069 kb on + strand, within Xcc-8004.3720.1at 3599.553 kb on - strandat 3600.279 kb on - strand, within Xcc-8004.3721.1at 3600.406 kb on + strand, within Xcc-8004.3721.1at 3600.407 kb on - strand, within Xcc-8004.3721.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,597,061 + +0.9
3,597,192 - +2.2
3,597,192 - +1.3
3,597,711 + -0.1
3,597,711 + -0.2
3,598,066 + Xcc-8004.3720.1 0.18 -0.8
3,598,073 - Xcc-8004.3720.1 0.18 -1.3
3,598,091 + Xcc-8004.3720.1 0.19 -1.3
3,598,092 - Xcc-8004.3720.1 0.19 -0.9
3,598,677 + Xcc-8004.3720.1 0.51 +0.3
3,598,678 - Xcc-8004.3720.1 0.51 +0.1
3,598,807 - Xcc-8004.3720.1 0.59 +1.5
3,598,807 - Xcc-8004.3720.1 0.59 +0.3
3,598,895 + Xcc-8004.3720.1 0.63 -1.2
3,598,895 + Xcc-8004.3720.1 0.63 -0.2
3,598,895 + Xcc-8004.3720.1 0.63 -1.6
3,598,896 - Xcc-8004.3720.1 0.63 -1.7
3,598,896 - Xcc-8004.3720.1 0.63 -1.1
3,598,898 - Xcc-8004.3720.1 0.64 -0.1
3,598,898 - Xcc-8004.3720.1 0.64 -0.8
3,598,898 - Xcc-8004.3720.1 0.64 +0.4
3,598,898 - Xcc-8004.3720.1 0.64 -0.2
3,598,980 - Xcc-8004.3720.1 0.68 -0.2
3,598,980 - Xcc-8004.3720.1 0.68 +0.7
3,599,069 + Xcc-8004.3720.1 0.73 -0.7
3,599,553 - -1.2
3,600,279 - Xcc-8004.3721.1 0.65 -0.9
3,600,406 + Xcc-8004.3721.1 0.81 +0.7
3,600,407 - Xcc-8004.3721.1 0.81 -1.6

Or see this region's nucleotide sequence