Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3659.1 and Xcc-8004.3660.1 are separated by 96 nucleotides Xcc-8004.3660.1 and Xcc-8004.3661.1 are separated by 86 nucleotides Xcc-8004.3661.1 and Xcc-8004.3662.1 are separated by 88 nucleotides
Xcc-8004.3659.1: Xcc-8004.3659.1 - Oxidoreductase, at 3,539,099 to 3,540,370
Xcc-8004.3659.1
Xcc-8004.3660.1: Xcc-8004.3660.1 - Cold shock protein CspD, at 3,540,467 to 3,540,673
Xcc-8004.3660.1
Xcc-8004.3661.1: Xcc-8004.3661.1 - 5'-methylthioadenosine phosphorylase (EC 2.4.2.28), at 3,540,760 to 3,541,512
Xcc-8004.3661.1
Xcc-8004.3662.1: Xcc-8004.3662.1 - Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8), at 3,541,601 to 3,542,155
Xcc-8004.3662.1
Position (kb) 3540
3541 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3539.708 kb on + strand, within Xcc-8004.3659.1 at 3539.779 kb on - strand, within Xcc-8004.3659.1 at 3539.779 kb on - strand, within Xcc-8004.3659.1 at 3539.779 kb on - strand, within Xcc-8004.3659.1 at 3539.779 kb on - strand, within Xcc-8004.3659.1 at 3539.802 kb on + strand, within Xcc-8004.3659.1 at 3539.802 kb on + strand, within Xcc-8004.3659.1 at 3539.803 kb on - strand, within Xcc-8004.3659.1 at 3539.803 kb on - strand, within Xcc-8004.3659.1 at 3539.850 kb on + strand, within Xcc-8004.3659.1 at 3539.850 kb on + strand, within Xcc-8004.3659.1 at 3539.850 kb on + strand, within Xcc-8004.3659.1 at 3539.850 kb on + strand, within Xcc-8004.3659.1 at 3539.851 kb on - strand, within Xcc-8004.3659.1 at 3539.851 kb on - strand, within Xcc-8004.3659.1 at 3539.929 kb on - strand, within Xcc-8004.3659.1 at 3540.144 kb on + strand, within Xcc-8004.3659.1 at 3540.144 kb on + strand, within Xcc-8004.3659.1 at 3540.144 kb on + strand, within Xcc-8004.3659.1 at 3540.144 kb on + strand, within Xcc-8004.3659.1 at 3540.144 kb on + strand, within Xcc-8004.3659.1 at 3540.145 kb on - strand, within Xcc-8004.3659.1 at 3540.145 kb on - strand, within Xcc-8004.3659.1 at 3540.145 kb on - strand, within Xcc-8004.3659.1 at 3540.145 kb on - strand, within Xcc-8004.3659.1 at 3540.525 kb on + strand, within Xcc-8004.3660.1 at 3540.525 kb on + strand, within Xcc-8004.3660.1 at 3540.525 kb on + strand, within Xcc-8004.3660.1 at 3540.525 kb on + strand, within Xcc-8004.3660.1 at 3540.526 kb on - strand, within Xcc-8004.3660.1 at 3540.526 kb on - strand, within Xcc-8004.3660.1 at 3540.526 kb on - strand, within Xcc-8004.3660.1 at 3540.526 kb on - strand, within Xcc-8004.3660.1 at 3540.526 kb on - strand, within Xcc-8004.3660.1 at 3540.710 kb on + strand at 3540.710 kb on + strand at 3540.710 kb on + strand at 3540.711 kb on - strand at 3540.734 kb on - strand at 3540.744 kb on + strand at 3540.744 kb on + strand at 3540.744 kb on + strand at 3540.744 kb on + strand at 3540.745 kb on - strand at 3540.745 kb on - strand at 3540.745 kb on - strand at 3540.745 kb on - strand at 3540.899 kb on + strand, within Xcc-8004.3661.1 at 3540.900 kb on - strand, within Xcc-8004.3661.1 at 3541.028 kb on + strand, within Xcc-8004.3661.1 at 3541.029 kb on - strand, within Xcc-8004.3661.1 at 3541.029 kb on - strand, within Xcc-8004.3661.1 at 3541.029 kb on - strand, within Xcc-8004.3661.1 at 3541.029 kb on - strand, within Xcc-8004.3661.1 at 3541.103 kb on + strand, within Xcc-8004.3661.1 at 3541.104 kb on - strand, within Xcc-8004.3661.1 at 3541.178 kb on + strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.304 kb on + strand, within Xcc-8004.3661.1 at 3541.304 kb on + strand, within Xcc-8004.3661.1 at 3541.305 kb on - strand, within Xcc-8004.3661.1 at 3541.305 kb on - strand, within Xcc-8004.3661.1 at 3541.463 kb on + strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.589 kb on - strand at 3541.589 kb on - strand at 3541.603 kb on - strand at 3541.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,539,708 + Xcc-8004.3659.1 0.48 +0.0 3,539,779 - Xcc-8004.3659.1 0.53 -0.1 3,539,779 - Xcc-8004.3659.1 0.53 -0.5 3,539,779 - Xcc-8004.3659.1 0.53 -0.2 3,539,779 - Xcc-8004.3659.1 0.53 -2.1 3,539,802 + Xcc-8004.3659.1 0.55 +0.7 3,539,802 + Xcc-8004.3659.1 0.55 -0.6 3,539,803 - Xcc-8004.3659.1 0.55 +0.2 3,539,803 - Xcc-8004.3659.1 0.55 +0.3 3,539,850 + Xcc-8004.3659.1 0.59 +0.6 3,539,850 + Xcc-8004.3659.1 0.59 -1.1 3,539,850 + Xcc-8004.3659.1 0.59 -0.8 3,539,850 + Xcc-8004.3659.1 0.59 -0.5 3,539,851 - Xcc-8004.3659.1 0.59 +0.4 3,539,851 - Xcc-8004.3659.1 0.59 +0.5 3,539,929 - Xcc-8004.3659.1 0.65 -0.5 3,540,144 + Xcc-8004.3659.1 0.82 +0.1 3,540,144 + Xcc-8004.3659.1 0.82 +1.4 3,540,144 + Xcc-8004.3659.1 0.82 -0.6 3,540,144 + Xcc-8004.3659.1 0.82 +0.3 3,540,144 + Xcc-8004.3659.1 0.82 +0.8 3,540,145 - Xcc-8004.3659.1 0.82 +0.4 3,540,145 - Xcc-8004.3659.1 0.82 -1.2 3,540,145 - Xcc-8004.3659.1 0.82 +1.2 3,540,145 - Xcc-8004.3659.1 0.82 +0.0 3,540,525 + Xcc-8004.3660.1 0.28 +1.0 3,540,525 + Xcc-8004.3660.1 0.28 +0.1 3,540,525 + Xcc-8004.3660.1 0.28 -0.4 3,540,525 + Xcc-8004.3660.1 0.28 +0.8 3,540,526 - Xcc-8004.3660.1 0.29 +0.5 3,540,526 - Xcc-8004.3660.1 0.29 +0.3 3,540,526 - Xcc-8004.3660.1 0.29 -2.2 3,540,526 - Xcc-8004.3660.1 0.29 +0.6 3,540,526 - Xcc-8004.3660.1 0.29 +0.1 3,540,710 + -0.5 3,540,710 + +1.1 3,540,710 + +0.2 3,540,711 - -0.2 3,540,734 - +1.2 3,540,744 + +0.1 3,540,744 + +0.4 3,540,744 + +0.8 3,540,744 + -0.7 3,540,745 - -0.7 3,540,745 - +0.9 3,540,745 - -1.1 3,540,745 - -0.1 3,540,899 + Xcc-8004.3661.1 0.18 +0.3 3,540,900 - Xcc-8004.3661.1 0.19 -1.0 3,541,028 + Xcc-8004.3661.1 0.36 -0.2 3,541,029 - Xcc-8004.3661.1 0.36 -2.0 3,541,029 - Xcc-8004.3661.1 0.36 +2.0 3,541,029 - Xcc-8004.3661.1 0.36 -0.5 3,541,029 - Xcc-8004.3661.1 0.36 -1.5 3,541,103 + Xcc-8004.3661.1 0.46 -0.6 3,541,104 - Xcc-8004.3661.1 0.46 +2.1 3,541,178 + Xcc-8004.3661.1 0.56 +1.4 3,541,179 - Xcc-8004.3661.1 0.56 -1.1 3,541,179 - Xcc-8004.3661.1 0.56 -0.9 3,541,179 - Xcc-8004.3661.1 0.56 +0.8 3,541,304 + Xcc-8004.3661.1 0.72 -0.6 3,541,304 + Xcc-8004.3661.1 0.72 -0.5 3,541,305 - Xcc-8004.3661.1 0.72 +0.1 3,541,305 - Xcc-8004.3661.1 0.72 -0.2 3,541,463 + -0.4 3,541,464 - +0.9 3,541,464 - -1.2 3,541,464 - -1.0 3,541,464 - +0.3 3,541,464 - -1.2 3,541,589 - +0.4 3,541,589 - -0.2 3,541,603 - -0.6 3,541,603 - +1.1
Or see this region's nucleotide sequence